RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PRF1P14222 555 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 HIST1H1DP16402 221 aaKnown RBP11.6□□□□□ -0.55
COL6A3-206ENST00000409809 HFEQ30201 348 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 MYOZ3Q8TDC0 251 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-206ENST00000409809 RNF39Q9H2S5 420 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 INTS1Q8N201 2190 aaKnown RBP11.6□□□□□ -0.55
COL6A3-206ENST00000409809 CTXND1A0A1B0GTU2 59 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 M0R082 166 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 HSPB6O14558 160 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 HBZP02008 142 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 TYMSP04818 313 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 NIT1Q86X76 327 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 OR10G4Q8NGN3 311 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 OR10G9Q8NGN4 311 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 OR10G7Q8NGN6 311 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 PBOV1Q9GZY1 135 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 ZNF835Q9Y2P0 537 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 V9GYH0 126 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 COL11A1P12107 1806 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-206ENST00000409809 LOC390937A0A1W2PQ73 354 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 HMX2A2RU54 273 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 CYR61O00622 381 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 SHBQ15464 509 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 FOLR2P14207 255 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 FCARP24071 287 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 ATP5IP56385 69 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-206ENST00000409809 HTR3DQ70Z44 454 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 CLDN23Q96B33 292 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 SPANXCQ9NY87 97 aa11.6□□□□□ -0.55
COL6A3-206ENST00000409809 PPP6CO00743 305 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 VDAC1P21796 283 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 ABHD17CQ6PCB6 329 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 PDPNQ86YL7 162 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 FTSJ1Q9UET6 329 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 ANXA10Q9UJ72 324 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 A4GNTQ9UNA3 340 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 GUSBP08236 651 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 CD46P15529 392 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 SAMD13Q5VXD3 122 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 WDFY1Q8IWB7 410 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 ZDHHC23Q8IYP9 409 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 HSD17B8Q92506 261 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 DERL3Q96Q80 235 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 ENSAO43768 121 aaKnown RBP11.59□□□□□ -0.55
COL6A3-206ENST00000409809 CD1CP29017 333 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 ACSM5Q6NUN0 579 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 GPRIN1Q7Z2K8 1008 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 PDLIM7Q9NR12 457 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 DECR2Q9NUI1 292 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 PISDQ9UG56 409 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 NPIPB9F8W1W9 429 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 EIF3GO75821 320 aaKnown RBP eCLIP11.59□□□□□ -0.55
COL6A3-206ENST00000409809 P01737 135 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 UBE2FQ969M7 185 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 ORAI1Q96D31 301 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 TEX37Q96LM6 180 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 MOGAT1Q96PD6 335 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 MPDU1O75352 247 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 FAM219AQ8IW50 185 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 CDCA3Q99618 268 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-206ENST00000409809 IER2Q9BTL4 223 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 ULBP3Q9BZM4 244 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 LIPGQ9Y5X9 500 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 GABRA6Q16445 453 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 BTLAQ7Z6A9 289 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 GRASPQ7Z6J2 395 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-206ENST00000409809 OTOSQ8NHW6 89 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 NUBPLQ8TB37 319 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 PRSS23O95084 383 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 LIAT1Q6ZQX7 453 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 D2HGDHQ8N465 521 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 OR8G5Q8NG78 346 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 CRYGNQ8WXF5 182 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 KTI12Q96EK9 354 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-206ENST00000409809 SOX21Q9Y651 276 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-206ENST00000409809 SPTBN2O15020 2390 aa11.59□□□□□ -0.55
COL6A3-206ENST00000409809 LOC102724200A0A096LPH7 203 aaPredicted RBP11.58□□□□□ -0.55
COL6A3-206ENST00000409809 A0A1B0GU03 582 aa11.58□□□□□ -0.55
COL6A3-206ENST00000409809 ATOH1Q92858 354 aaPredicted RBP11.58□□□□□ -0.55
COL6A3-206ENST00000409809 Q96M85 177 aa11.58□□□□□ -0.55
COL6A3-206ENST00000409809 NRIP2Q9BQI9 281 aa11.58□□□□□ -0.55
COL6A3-206ENST00000409809 OR2W1Q9Y3N9 320 aa11.58□□□□□ -0.55
COL6A3-206ENST00000409809 LINC01387J3KSC0 135 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 PFN3P60673 137 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 C20orf196Q8IYI0 205 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 TMEFF2Q9UIK5 374 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-206ENST00000409809 FXYD1O00168 92 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 DYNLRB1Q9NP97 96 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 IGKV6D-21A0A0A0MT36 114 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 TMEM30CPA0ZSE6 113 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 OR2J3O76001 311 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 CLDN18P56856 261 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 LIPIQ6XZB0 460 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 PLEKHB1Q9UF11 243 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-206ENST00000409809 TNFSF18Q9UNG2 199 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 TRBV11-1A0A0K0K1C0 115 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 SLC25A35Q3KQZ1 300 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 LINC00596Q86U02 117 aa11.58□□□□□ -0.56
COL6A3-206ENST00000409809 C17orf78Q8N4C9 275 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms