RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 OR2T2Q6IF00 324 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ALKAL2Q6UX46 152 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 C5orf24Q7Z6I8 188 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 SLAMF9Q96A28 289 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 SPSB1Q96BD6 273 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 HIST1H2AAQ96QV6 131 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 PPA2Q9H2U2 334 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 CHMP1AQ9HD42 196 aaPredicted RBP9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ASCL3Q9NQ33 180 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 CACNA1DQ01668 2161 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 IGKV3D-15A0A087WSY6 115 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 hCG_38984A0A1B0GV85 526 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 DHRS7CA6NNS2 312 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ALX3O95076 343 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 EXOSC2Q13868 293 aaKnown RBP9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ZBTB37Q5TC79 503 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ZNF585AQ6P3V2 769 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ZNF488Q96MN9 340 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 PHB2Q99623 299 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 MFFQ9GZY8 342 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 FN3KRPQ9HA64 309 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 RDH8Q9NYR8 311 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 SHANK1Q9Y566 2161 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 SPDEFO95238 335 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 TPOP07202 933 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 SEC61A1P61619 476 aaKnown RBP9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ZNF546Q86UE3 836 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 TMEM45BQ96B21 275 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 SULT4A1Q9BR01 284 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 ZNF2Q9BSG1 426 aaPredicted RBP9.63□□□□□ -0.87
TCOF1-203ENST00000394269 METTL8Q9H825 291 aaKnown RBP9.63□□□□□ -0.87
TCOF1-203ENST00000394269 AK3Q9UIJ7 227 aa9.63□□□□□ -0.87
TCOF1-203ENST00000394269 C9orf170A2RU37 121 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 ADAP1O75689 374 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 ACTL6AO96019 429 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 CELA3BP08861 270 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 HOXB5P09067 269 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 PDZK1IP1Q13113 114 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 PRDX4Q13162 271 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 FAM189A2Q15884 450 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 MDP1Q86V88 176 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 COQ8AQ8NI60 647 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 IL36RNQ9UBH0 155 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 OR5H14A6NHG9 310 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 CDRT15L2A8MXV6 281 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 ZNF732B4DXR9 585 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 XRCC2O43543 280 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 LILRA1O75019 489 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 FUT6P51993 359 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 RAB14P61106 215 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 ZNF767PQ75MW2 155 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 LYG2Q86SG7 212 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 OSR2Q8N2R0 312 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 OR5T2Q8NGG2 359 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 GPR137Q96N19 417 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 GHRLQ9UBU3 117 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 NPTNQ9Y639 398 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 PRR33A8MZF0 331 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 MCRIP1C9JLW8 97 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 F8VVB4 439 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 F8VWA3 439 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 KLK10O43240 276 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 EFSO43281 561 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 OR2A4O95047 310 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 CA6P23280 308 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 AGTR1P30556 359 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 UBE2NP61088 152 aaKnown RBP9.62□□□□□ -0.87
TCOF1-203ENST00000394269 FBXW9Q5XUX1 488 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 SIGIRRQ6IA17 410 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 HAGHLQ6PII5 290 aaPredicted RBP9.62□□□□□ -0.87
TCOF1-203ENST00000394269 LHFPL2Q6ZUX7 228 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 OR13G1Q8NGZ3 307 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 SSC4DQ8WTU2 575 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 PPP1R1CQ8WVI7 109 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 HS3ST6Q96QI5 342 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 OR2A7Q96R45 310 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 BCO1Q9HAY6 547 aa9.62□□□□□ -0.87
TCOF1-203ENST00000394269 TEX13DA0A0J9YY54 714 aaPredicted RBP9.61□□□□□ -0.87
TCOF1-203ENST00000394269 AGFG2O95081 481 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 IL18BPO95998 194 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 RBMXP38159 391 aaKnown RBP9.61□□□□□ -0.87
TCOF1-203ENST00000394269 SLC25A42Q86VD7 318 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 ZSCAN4Q8NAM6 433 aaPredicted RBP9.61□□□□□ -0.87
TCOF1-203ENST00000394269 OR10AD1Q8NGE0 317 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 C5orf66Q9H5L9 145 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 FBLN5Q9UBX5 448 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 MED13LQ71F56 2210 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 PLSCR5A0PG75 271 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 IFNA7P01567 189 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 SELEP16581 610 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 LY6G6FQ5SQ64 297 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 RPUSD3Q6P087 351 aaKnown RBP9.61□□□□□ -0.87
TCOF1-203ENST00000394269 FAM89BQ8N5H3 189 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 APOBEC3DQ96AK3 386 aaPredicted RBP9.61□□□□□ -0.87
TCOF1-203ENST00000394269 Q96M66 194 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 C1QTNF5Q9BXJ0 243 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 HEXA-AS1Q9H8Q6 139 aa9.61□□□□□ -0.87
TCOF1-203ENST00000394269 SERPINE3A8MV23 424 aa9.6□□□□□ -0.87
TCOF1-203ENST00000394269 H3BUI4 141 aa9.6□□□□□ -0.87
TCOF1-203ENST00000394269 HS3ST1O14792 307 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms