RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NOS1APO75052 506 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 AMY2AP04746 511 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 ZNF735P0CB33 412 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 UCP2P55851 309 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 GMFBP60983 142 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 UNC119Q13432 240 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 PNLIPRP3Q17RR3 467 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 CDNFQ49AH0 187 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 RNASE10Q5GAN6 216 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 IDO2Q6ZQW0 420 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 BPIFB2Q8N4F0 458 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 ZDHHC22Q8N966 263 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 SPACA5Q96QH8 159 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 TMEM59Q9BXS4 323 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 METTL9Q9H1A3 318 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 SH3BGRL2Q9UJC5 107 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 FRYQ5TBA9 3013 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 TRGV8A0A0C4DH27 118 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 LINC00862A6NCI5 91 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 F5H5P2 479 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 TSC22D2O75157 780 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 CELA3BP08861 270 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 TMEM225BP0DP42 221 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 NAT2P11245 290 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 RAC2P15153 192 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 ARL6IP1Q15041 203 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 PPA1Q15181 289 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 ACTBL2Q562R1 376 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 FAHD2BQ6P2I3 314 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 ACBD4Q8NC06 268 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 OR8S1Q8NH09 359 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 S100PBPQ96BU1 408 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 FAHD2AQ96GK7 314 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 MAP1BP46821 2468 aaKnown RBP15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 MGAQ8IWI9 3026 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 MEIS3P1A6NDR6 274 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 TMEM235A6NFC5 223 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 ZNF850A8MQ14 1090 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 M0R233 179 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 CRTAPO75718 401 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 AGFG2O95081 481 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 CBX5P45973 191 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 PRDX4Q13162 271 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 HLXQ14774 488 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 MOGAT2Q3SYC2 334 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 C4orf46Q504U0 113 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 C6orf183Q5T699 404 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 TRAPPC6BQ86SZ2 158 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 FJX1Q86VR8 437 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 MUC20Q8N307 709 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 OR56B1Q8NGI3 324 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 OR1J1Q8NGS3 322 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 WBP1Q96G27 269 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 CHIAQ9BZP6 476 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 CA10Q9NS85 328 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 OPN4Q9UHM6 478 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 ANAPC10Q9UM13 185 aa15.65■□□□□ 0.1
CCDC88C-203ENST00000389856 PRRC2CQ9Y520 2896 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 ZGRF1Q86YA3 2104 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 RTTNQ86VV8 2226 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 OR5B21A6NL26 309 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 CDC14BO60729 498 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 CSTBP04080 98 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 OR4E1P0C645 316 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 CECR9P0C854 216 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 ZNF35P13682 527 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 NFYAP23511 347 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 CA7P43166 264 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 CEACAM21Q3KPI0 293 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 OR10K2Q6IF99 312 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 C12orf45Q8N5I9 185 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 ZSCAN4Q8NAM6 433 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 CHST4Q8NCG5 386 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 PXT1Q8NFP0 134 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 OR5A2Q8NGI9 324 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 DVL3Q92997 716 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 NKX3-1Q99801 234 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 POFUT1Q9H488 388 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 ELL3Q9HB65 397 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 IFT46Q9NQC8 304 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 UBQLN2Q9UHD9 624 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 MEMO1Q9Y316 297 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 MAB21L2Q9Y586 359 aa15.64■□□□□ 0.09
CCDC88C-203ENST00000389856 C16orf97H3BN30 126 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 MPIG6BO95866 241 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 PPP3CBP16298 524 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 NAT1P18440 290 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 RSU1Q15404 277 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 SLC22A6Q4U2R8 563 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 CLLU1Q5K131 121 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 MARVELD3Q96A59 401 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 DMRTA2Q96SC8 542 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 C1QTNF6Q9BXI9 259 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 TINAGL1Q9GZM7 467 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 LPAR5Q9H1C0 372 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 OR51B6Q9H340 312 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 JKAMPQ9P055 326 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 PIEZO2Q9H5I5 2752 aa15.63■□□□□ 0.09
CCDC88C-203ENST00000389856 TLN1Q9Y490 2541 aaKnown RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms