RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 HIST1H2BKO60814 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 ONECUT2O95948 504 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BJP06899 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BOP23527 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 CRABP1P29762 137 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BBP33778 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 NXPH1P58417 271 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BDP58876 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BCP62807 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 SMAD4Q13485 552 aaKnown RBP12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST2H2BEQ16778 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 NKAIN1Q4KMZ8 207 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.18□□□□□ -0.46
SDC1-202ENST00000381150 C1orf140Q5VVS0 124 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 C6orf201Q7Z4U5 140 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 LYZL2Q7Z4W2 148 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 TMEM156Q8N614 296 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BHQ93079 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 SLC46A1Q96NT5 459 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 GNRHR2Q96P88 292 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BNQ99877 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H2BMQ99879 126 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 SLC7A11Q9UPY5 501 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 FER1L5A0AVI2 2057 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 TMED7-TICAM2A0A0A6YYA0 188 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 SLC31A2O15432 143 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 PDCD1Q15116 288 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 UBE2V2Q15819 145 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 C1orf100Q5SVJ3 147 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 NUP210LQ5VU65 1888 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 TMEM268Q5VZI3 342 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 HEPN1Q6WQI6 88 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 FAM57BQ71RH2 274 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 Q7L0L9 218 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 C20orf196Q8IYI0 205 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 ZNF283Q8N7M2 679 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 PIGTQ969N2 578 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 PACRGQ96M98 296 aaPredicted RBP12.18□□□□□ -0.46
SDC1-202ENST00000381150 TAAR9Q96RI9 348 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 VN1R1Q9GZP7 353 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 PRDM13Q9H4Q3 707 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 GPR84Q9NQS5 396 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 MMACHCQ9Y4U1 282 aa12.18□□□□□ -0.46
SDC1-202ENST00000381150 IGLV1-36A0A0B4J1U3 117 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 A8MVM7 634 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 STMND1H3BQB6 276 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 CDC14BO60729 498 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 BPNT1O95861 308 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 TTRP02766 147 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 MMP7P09237 267 aaPredicted RBP12.17□□□□□ -0.46
SDC1-202ENST00000381150 PIGPP57054 158 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 ERVFRD-1P60508 538 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 TOMM20Q15388 145 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 NUP54Q7Z3B4 507 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 ZNF429Q86V71 674 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 CYB561D1Q8N8Q1 229 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 STT3BQ8TCJ2 826 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 HAS2Q92819 552 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 NTNG2Q96CW9 530 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 LIN37Q96GY3 246 aaPredicted RBP12.17□□□□□ -0.46
SDC1-202ENST00000381150 ADAM19Q9H013 955 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 OR10A2Q9H208 303 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 WFDC1Q9HC57 220 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 PLEKHJ1Q9NW61 149 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 STARD10Q9Y365 291 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 HS3ST3B1Q9Y662 390 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 OR5H15A6NDH6 313 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 OR5H1A6NKK0 313 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 CST7O76096 145 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 HIST1H1BP16401 226 aaKnown RBP12.17□□□□□ -0.46
SDC1-202ENST00000381150 IGFBP4P22692 258 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 OR8G1Q15617 311 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 HIST2H3PS2Q5TEC6 136 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 KCNG3Q8TAE7 436 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 TXNIPQ9H3M7 391 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 SDHAF3Q9NRP4 125 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 FRG2CA6NGY1 282 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 TRGC1P0CF51 173 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 OR1D5P58170 312 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 HNRNPKP61978 463 aaKnown RBP eCLIP12.17□□□□□ -0.46
SDC1-202ENST00000381150 ZNF880Q6PDB4 577 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 NIPSNAP3BQ9BS92 247 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 PCED1AQ9H1Q7 454 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 AK3Q9UIJ7 227 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 KCNIP3Q9Y2W7 256 aa12.17□□□□□ -0.46
SDC1-202ENST00000381150 IGHV1OR21-1A0A087WYE8 117 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 SEC14L6B5MCN3 397 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 DEDDO75618 318 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 IFNA10P01566 189 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 MBPP02686 304 aaPredicted RBP12.16□□□□□ -0.46
SDC1-202ENST00000381150 PGA4P0DJD7 388 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 PGA5P0DJD9 388 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 RAB11AP62491 216 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 PLCXD2Q0VAA5 305 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 AADACL3Q5VUY0 350 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 C1QL2Q7Z5L3 287 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 OR2AJ1Q8NGZ0 328 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 OR1L3Q8NH93 324 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 SLC39A7Q92504 469 aa12.16□□□□□ -0.46
SDC1-202ENST00000381150 DYRK2Q92630 601 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms