RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TAF13Q15543 124 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 C2orf68Q2NKX9 166 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 DCAF12L2Q5VW00 463 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 CARD17Q5XLA6 110 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 OR5D14Q8NGL3 314 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 RXFP4Q8TDU9 374 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 ABHD3Q8WU67 409 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 SEC11CQ9BY50 192 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 PRRG4Q9BZD6 226 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 TMEM138Q9NPI0 162 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 CLCF1Q9UBD9 225 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 RHBDD3Q9Y3P4 386 aa12.43□□□□□ -0.42
HMGA1-203ENST00000374116 KANTRA0A1W2PQU2 76 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 SLC22A20A6NK97 555 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 J3QKU1 62 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 VAMP5O95183 116 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 RNF224P0DH78 156 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 GLI4P10075 376 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 CDAP32320 146 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 TAS2R19P59542 299 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 SORDQ00796 357 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 FOXF2Q12947 444 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 HABP2Q14520 560 aaPredicted RBP12.42□□□□□ -0.42
HMGA1-203ENST00000374116 Q3ZCU0 254 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 CDNFQ49AH0 187 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 RAB12Q6IQ22 244 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 LPCAT3Q6P1A2 487 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 ZNF627Q7L945 461 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 P4HA3Q7Z4N8 544 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 TMEM229BQ8NBD8 167 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 THAP6Q8TBB0 222 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 SEH1LQ96EE3 360 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 TINAGL1Q9GZM7 467 aaPredicted RBP12.42□□□□□ -0.42
HMGA1-203ENST00000374116 MYOZ1Q9NP98 299 aaPredicted RBP12.42□□□□□ -0.42
HMGA1-203ENST00000374116 ZNF107Q9UII5 783 aaPredicted RBP12.42□□□□□ -0.42
HMGA1-203ENST00000374116 RAB22AQ9UL26 194 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 PCDHB10Q9UN67 800 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 TNFSF18Q9UNG2 199 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 GCN1Q92616 2671 aaKnown RBP12.42□□□□□ -0.42
HMGA1-203ENST00000374116 TENM4Q6N022 2769 aa12.42□□□□□ -0.42
HMGA1-203ENST00000374116 UBR5O95071 2799 aaPredicted RBP12.42□□□□□ -0.42
HMGA1-203ENST00000374116 RNF222A6NCQ9 220 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 METTL21EPA6NDL7 271 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 SMAD9O15198 467 aaKnown RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ST8SIA5O15466 376 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 DNPH1O43598 174 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ERCC1P07992 297 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 GNALP38405 381 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 CLDN17P56750 224 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 RAC3P60763 192 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 SRSF1Q07955 248 aaKnown RBP eCLIP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 CDSNQ15517 529 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 NSUN5P2Q63ZY6 315 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 STEAP1BQ6NZ63 245 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ZNF529Q6P280 563 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 SLC22A24Q8N4F4 322 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 OR4D6Q8NGJ1 314 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 OR52B4Q8NGK2 314 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 OR1J2Q8NGS2 313 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 NKX3-1Q99801 234 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 NAA11Q9BSU3 229 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 METTL1Q9UBP6 276 aaKnown RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 INTS1Q8N201 2190 aaKnown RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 A0A0G2JNJ9 132 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 A0A1B0GTI1 187 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ZG16O60844 167 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 BPNT1O95861 308 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ARHGDIBP52566 201 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 LSM6P62312 80 aaKnown RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 GRB2P62993 217 aaKnown RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 CSNK2A1P68400 391 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ADORA2A-AS1P86434 159 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 SLC16A13Q7RTY0 426 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 GABRG1Q8N1C3 465 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 MUC20Q8N307 709 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 TMEM54Q969K7 222 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ADAT3Q96EY9 351 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 CNTD2Q9H8S5 307 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 NIT2Q9NQR4 276 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 TMEM100Q9NV29 134 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 ASH2LQ9UBL3 628 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 Q9UFV3 132 aa12.41□□□□□ -0.42
HMGA1-203ENST00000374116 MCTS1Q9ULC4 181 aaKnown RBP12.41□□□□□ -0.42
HMGA1-203ENST00000374116 MEIS3P1A6NDR6 274 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 ZNF729A6NN14 1252 aaPredicted RBP12.4□□□□□ -0.42
HMGA1-203ENST00000374116 E9PLN8 166 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 SYNGR4O95473 234 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 CD3DP04234 171 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 ZNF20P17024 532 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 PMELP40967 661 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 GUCA1AP43080 201 aaPredicted RBP12.4□□□□□ -0.42
HMGA1-203ENST00000374116 C10orf128Q5T292 105 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 FIP1L1Q6UN15 594 aaKnown RBP12.4□□□□□ -0.42
HMGA1-203ENST00000374116 FOXL2NBQ6ZUU3 175 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 ZNF546Q86UE3 836 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 TMEM123Q8N131 208 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 ZIC4Q8N9L1 334 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 OR51S1Q8NGJ8 323 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 OR1S2Q8NGQ3 325 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms