RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 OTOL1A6NHN0 477 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 SLC14A1Q13336 389 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ARIH2OSQ8N7S6 290 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 NRIP2Q9BQI9 281 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 HCFC1R1Q9NWW0 138 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PRNDQ9UKY0 176 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 KIF20BQ96Q89 1820 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FAM72CH0Y354 149 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 HRH1P35367 487 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MEF2BQ02080 365 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FAM72AQ5TYM5 149 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FAM72DQ6L9T8 149 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FAM72BQ86X60 149 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 OR5D13Q8NGL4 314 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF563Q8TA94 476 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 RAB1CQ92928 201 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MRGPRX2Q96LB1 330 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 C17orf51A8MQB3 221 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 H0Y980 276 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 S1PR2O95136 353 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 CEACAM21Q3KPI0 293 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PLPP4Q5VZY2 271 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PAQR3Q6TCH7 311 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PELI1Q96FA3 418 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 NRTNQ99748 197 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PRDM7Q9NQW5 492 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MDC1Q14676 2089 aaKnown RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF253O75346 499 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ACTL6BO94805 426 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 GABRG3Q99928 467 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 SMG9Q9H0W8 520 aaKnown RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FBXL12Q9NXK8 326 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 TMED7-TICAM2A0A0A6YYA0 188 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 IL2RAP01589 272 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 OR3A1P47881 315 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MGAT2Q10469 447 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 RNF138Q8WVD3 245 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 S1PR3Q99500 378 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 INIPQ9NRY2 104 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 TIMM10BQ9Y5J6 103 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PRRG2O14669 202 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 IL15RAQ13261 267 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MAJINQ3KP22 176 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 OR1L4Q8NGR5 311 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 TEX37Q96LM6 180 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MCHR1Q99705 422 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF551Q7Z340 670 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 DTX1Q86Y01 620 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 OR1S1Q8NH92 325 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF768Q9H5H4 540 aaKnown RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 AUNIPQ9H7T9 357 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PEAK1Q9H792 1746 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ERGP11308 486 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FUT3P21217 361 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ATP6V0CP27449 155 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 DMKNQ6E0U4 476 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 BHLHA15Q7RTS1 189 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ADAT1Q9BUB4 502 aaKnown RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 SFXN1Q9H9B4 322 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 RHBDD3Q9Y3P4 386 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 AQP7P3A6NL99 342 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ELOVL2Q9NXB9 296 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MRPL27Q9P0M9 148 aaKnown RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 EP300Q09472 2414 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 GLIPR1P48060 266 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 NSDHLQ15738 373 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 SLC48A1Q6P1K1 146 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 AGBL5Q8NDL9 886 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 OR52E1Q8NGJ3 308 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 GMLQ99445 158 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ONECUT1Q9UBC0 465 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 NPIPB11E5RHQ5 1161 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 NXPH3O95157 252 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 NEGR1Q7Z3B1 354 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF761Q86XN6 746 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 OR51H1Q8NH63 302 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 C8orf46Q8TAG6 207 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 GPR78Q96P69 363 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 A0A087WUU8 490 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 CTXND1A0A1B0GTU2 59 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 UBE2L5PA0A1B0GUS4 154 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FGF18O76093 207 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 UBE2L3P68036 154 aaKnown RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF66Q6ZN08 573 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF534Q76KX8 674 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 PPP1R1CQ8WVI7 109 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 BCHEP06276 602 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF90Q03938 601 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF124Q15973 351 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 FER1L6-AS2Q96M78 137 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 OCIAD1Q9NX40 245 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MBD1Q9UIS9 605 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 ZNF117Q03924 483 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 SPACA9Q96E40 222 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 MAP1LC3CQ9BXW4 147 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 F8VVB4 439 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 F8VWA3 439 aa3.36□□□□□ -1.87
SYNE1-207ENST00000367255 KLF7O75840 302 aaPredicted RBP3.36□□□□□ -1.87
SYNE1-207ENST00000367255 NGFP01138 241 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms