RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 HAAOP46952 286 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 CEBPDP49716 269 aaPredicted RBP11.06□□□□□ -0.64
VPS29-201ENST00000360579 ARHGDIBP52566 201 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 EDDM3BP56851 147 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 ACTA2P62736 377 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 ACTG2P63267 376 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 ACTC1P68032 377 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 ACTA1P68133 377 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 MEF2CQ06413 473 aaPredicted RBP11.06□□□□□ -0.64
VPS29-201ENST00000360579 ZNF684Q5T5D7 378 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 GDPD3Q7L5L3 318 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 COMMD2Q86X83 199 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 MRPL41Q8IXM3 137 aaKnown RBP11.06□□□□□ -0.64
VPS29-201ENST00000360579 AQP11Q8NBQ7 271 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 ZNF488Q96MN9 340 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 NRIP2Q9BQI9 281 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 MED20Q9H944 212 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 ARMC1Q9NVT9 282 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 ENPP5Q9UJA9 477 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS29-201ENST00000360579 DNAH7Q8WXX0 4024 aa11.06□□□□□ -0.64
VPS29-201ENST00000360579 STAB2Q8WWQ8 2551 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 FAM183AA6NL82 134 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 ZFPL1O95159 310 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 SOX14O95416 240 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 NRASP01111 189 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 LPLP06858 475 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 CHRM2P08172 466 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 HSD17B1P14061 328 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 HTR1DP28221 377 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 SLC6A1P30531 599 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 DGCR2P98153 550 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 ABCA11PQ4W5N1 156 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 TRPM8Q7Z2W7 1104 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 KRT77Q7Z794 578 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 ZNF676Q8N7Q3 588 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 ASCC1Q8N9N2 400 aaKnown RBP11.05□□□□□ -0.64
VPS29-201ENST00000360579 STMN2Q93045 179 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 DGCR6LQ9BY27 220 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 OR51V1Q9H2C8 321 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 HES4Q9HCC6 221 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 SLC22A13Q9Y226 551 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 PIGLQ9Y2B2 252 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 SESN1Q9Y6P5 492 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 SACSQ9NZJ4 4579 aa11.05□□□□□ -0.64
VPS29-201ENST00000360579 EPPK1P58107 5090 aaKnown RBP11.04□□□□□ -0.64
VPS29-201ENST00000360579 IGHV2-26A0A0B4J1V2 119 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 TMEM269A0A1B0GVZ9 245 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 hADV38S2A0JD32 116 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 M0QZK8 103 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 RAMP3O60896 148 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 OR2F2O95006 317 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 JUNBP17275 347 aaPredicted RBP11.04□□□□□ -0.64
VPS29-201ENST00000360579 DMRTC1Q5HYR2 192 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 DEGS2Q6QHC5 323 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 TEX47Q8TBZ9 253 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 ZNF649Q9BS31 505 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 SLC25A33Q9BSK2 321 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 CLEC7AQ9BXN2 247 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 TMEM133Q9H2Q1 129 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 LAMP5Q9UJQ1 280 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 BIRC6Q9NR09 4857 aa11.04□□□□□ -0.64
VPS29-201ENST00000360579 ARPC2O15144 300 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 PRODHO43272 600 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 SELENOFO60613 162 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 DHRS3O75911 302 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 MPZP25189 248 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 THBS3P49746 956 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 GP2P55259 537 aaKnown RBP11.03□□□□□ -0.64
VPS29-201ENST00000360579 CLVS2Q5SYC1 327 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 KCTD18Q6PI47 426 aaPredicted RBP11.03□□□□□ -0.64
VPS29-201ENST00000360579 OR8H2Q8N162 312 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 OSR2Q8N2R0 312 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 OR51E1Q8TCB6 317 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 MROQ9BYG7 248 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 PBOV1Q9GZY1 135 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 GPR84Q9NQS5 396 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 FAM206AQ9NX38 181 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 DPM3Q9P2X0 92 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 LINC00312Q9Y6C7 94 aa11.03□□□□□ -0.64
VPS29-201ENST00000360579 PQLC2LA1A4F0 135 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 PSMB11A5LHX3 300 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 PRR23D1E9PI22 279 aaPredicted RBP11.02□□□□□ -0.65
VPS29-201ENST00000360579 DLGAP1O14490 977 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 ZNF737O75373 536 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 IGLV3-1P01715 115 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 CCDC159P0C7I6 412 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 PRR23D2P0DMB1 279 aaPredicted RBP11.02□□□□□ -0.65
VPS29-201ENST00000360579 ALOX5APP20292 161 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 PRDX6P30041 224 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 ERVK11-1P61568 191 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 MICAQ29983 383 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 LCE2AQ5TA79 106 aaPredicted RBP11.02□□□□□ -0.65
VPS29-201ENST00000360579 CD300LDQ6UXZ3 194 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 ETV3LQ6ZN32 361 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 OR4P4Q8NGL7 312 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 SNX22Q96L94 193 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 RBM14Q96PK6 669 aaKnown RBP11.02□□□□□ -0.65
VPS29-201ENST00000360579 PKIBQ9C010 78 aa11.02□□□□□ -0.65
VPS29-201ENST00000360579 VNN3Q9NY84 501 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms