RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ARHGAP5-AS1Q96IT6 56 aa13.92□□□□□ -0.18
HMGA1-202ENST00000347617 ADOQ96SZ5 270 aa13.92□□□□□ -0.18
HMGA1-202ENST00000347617 TBL1XR1Q9BZK7 514 aa13.92□□□□□ -0.18
HMGA1-202ENST00000347617 ARRDC1-AS1Q9H2J1 176 aa13.92□□□□□ -0.18
HMGA1-202ENST00000347617 WDR54Q9H977 334 aa13.92□□□□□ -0.18
HMGA1-202ENST00000347617 NXT1Q9UKK6 140 aaKnown RBP13.92□□□□□ -0.18
HMGA1-202ENST00000347617 NCOR1O75376 2440 aa13.92□□□□□ -0.18
HMGA1-202ENST00000347617 FOXI3A8MTJ6 420 aaPredicted RBP13.91□□□□□ -0.18
HMGA1-202ENST00000347617 FTCDNL1E5RQL4 147 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 RAD51DO75771 328 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 TIAF1O95411 115 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 ARG1P05089 322 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 HEXBP07686 556 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 PI3P19957 117 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 RAB4BP61018 213 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 PKIAP61925 76 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 ANKRD37Q7Z713 158 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 LINC00346Q8IVM7 164 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 FOXRED2Q8IWF2 684 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 LRTM2Q8N967 370 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 ZNF383Q8NA42 475 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 MFSD8Q8NHS3 518 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 SLAMF9Q96A28 289 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 WWTR1Q9GZV5 400 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 LSM5Q9Y4Y9 91 aaKnown RBP13.91□□□□□ -0.18
HMGA1-202ENST00000347617 FER1L5A0AVI2 2057 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 ADAM10O14672 748 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 TSPAN2O60636 221 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 CRTAPO75718 401 aaPredicted RBP13.91□□□□□ -0.18
HMGA1-202ENST00000347617 DAOP14920 347 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 C9orf152Q5JTZ5 239 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 MRPL14Q6P1L8 145 aaKnown RBP13.91□□□□□ -0.18
HMGA1-202ENST00000347617 POMZP3Q6PJE2 187 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 DOK3Q7L591 496 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 SSX9Q7RTT3 188 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 C9orf40Q8IXQ3 194 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 NFAM1Q8NET5 270 aaPredicted RBP13.91□□□□□ -0.18
HMGA1-202ENST00000347617 MR1Q95460 341 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 WDR77Q9BQA1 342 aaPredicted RBP13.91□□□□□ -0.18
HMGA1-202ENST00000347617 C20orf24Q9BUV8 137 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 TM2D1Q9BX74 207 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 SUCNR1Q9BXA5 334 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 OCIAD1Q9NX40 245 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 PRR13Q9NZ81 148 aa13.91□□□□□ -0.18
HMGA1-202ENST00000347617 LOC101059948A0A1B0GTJ6 334 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 B4DEV8 164 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 B4E171 279 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 ZNF878C9JN71 531 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 ZNF587BE7ETH6 402 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 TSTD3H0UI37 97 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 K7N7A8 449 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 TSPAN7P41732 249 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 TGIF1Q15583 401 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 H1FNTQ75WM6 255 aaPredicted RBP13.9□□□□□ -0.18
HMGA1-202ENST00000347617 TMEM104Q8NE00 496 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 CCDC54Q8NEL0 328 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 GPR119Q8TDV5 335 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 SSC4DQ8WTU2 575 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 ST6GALNAC5Q9BVH7 336 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 RYDENQ9NUL5 291 aaKnown RBP13.9□□□□□ -0.18
HMGA1-202ENST00000347617 DOK5Q9P104 306 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 KLHL13Q9P2N7 655 aa13.9□□□□□ -0.18
HMGA1-202ENST00000347617 C19orf25Q9UFG5 118 aaPredicted RBP13.9□□□□□ -0.18
HMGA1-202ENST00000347617 H7C1Q1 480 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 HCKP08631 526 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 ZNF133P52736 654 aaPredicted RBP13.89□□□□□ -0.19
HMGA1-202ENST00000347617 NDUFA6P56556 154 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 SLC22A25Q6T423 547 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 OR51T1Q8NGJ9 327 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 C11orf40Q8WZ69 217 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 ERGIC1Q969X5 290 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 GPER1Q99527 375 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 PECRQ9BY49 303 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 SMIM3Q9BZL3 60 aa13.89□□□□□ -0.19
HMGA1-202ENST00000347617 ASCC3Q8N3C0 2202 aaKnown RBP13.89□□□□□ -0.19
HMGA1-202ENST00000347617 MS4A18H0YCH9 400 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 PPP1R2P9O14990 202 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 YIF1AO95070 293 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 PTBP3O95758 552 aaKnown RBP13.88□□□□□ -0.19
HMGA1-202ENST00000347617 KLK3P07288 261 aaPredicted RBP13.88□□□□□ -0.19
HMGA1-202ENST00000347617 CD63P08962 238 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 OR3A4PP47883 348 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 MS4A18Q3C1V0 323 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 M1APQ8TC57 530 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 ST8SIA1Q92185 356 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 SPSB2Q99619 263 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 CHST11Q9NPF2 352 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 KIAA1456Q9P272 454 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 RBFOX3A6NFN3 312 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 MASP2O00187 686 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 GPR37O15354 613 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 SLC31A2O15432 143 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 KNG1P01042 644 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 MBPP02686 304 aaPredicted RBP13.88□□□□□ -0.19
HMGA1-202ENST00000347617 DUSP1P28562 367 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 TAS2R60P59551 318 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 RNF4P78317 190 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 NKX6-1P78426 367 aaPredicted RBP13.88□□□□□ -0.19
HMGA1-202ENST00000347617 ZNF266Q14584 549 aa13.88□□□□□ -0.19
HMGA1-202ENST00000347617 LPAL2Q16609 132 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms