RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SLC35D2Q76EJ3 337 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 NUFIP2Q7Z417 695 aaKnown RBP4.9□□□□□ -1.63
CSDE1-202ENST00000339438 FOXRED2Q8IWF2 684 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 GBGT1Q8N5D6 347 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 NKAIN3Q8N8D7 197 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 COX18Q8N8Q8 333 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 OR2AJ1Q8NGZ0 328 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 CMBLQ96DG6 245 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 MS4A6EQ96DS6 147 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 LMF1Q96S06 567 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 C11orf1Q9H5F2 150 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 FGF22Q9HCT0 170 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 PHPT1Q9NRX4 125 aaPredicted RBP4.9□□□□□ -1.63
CSDE1-202ENST00000339438 SLC5A6Q9Y289 635 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 RCL1Q9Y2P8 373 aaKnown RBP4.9□□□□□ -1.63
CSDE1-202ENST00000339438 MAP1BP46821 2468 aaKnown RBP4.9□□□□□ -1.63
CSDE1-202ENST00000339438 MPDZO75970 2070 aa4.9□□□□□ -1.63
CSDE1-202ENST00000339438 SCN2AQ99250 2005 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF860A6NHJ4 632 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 B4E171 279 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 FTCDNL1E5RQL4 147 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 K7EPK0 472 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 GMFGO60234 142 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 DNAJB6O75190 326 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SEMA4FO95754 770 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 CEACAM5P06731 702 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 MDKP21741 143 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 CDKN2AP42771 156 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 P2RY1P47900 373 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 LSSP48449 732 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 COMPP49747 757 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 RPS21P63220 83 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 NKAIN1Q4KMZ8 207 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ALG10BQ5I7T1 473 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 WDR38Q5JTN6 314 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 RIPPLY2Q5TAB7 128 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 MDGA2Q7Z553 956 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 TAF8Q7Z7C8 310 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 FAM71E2Q8N5Q1 922 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 OR56A1Q8NGH5 318 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 OR13C9Q8NGT0 318 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 METTL21AQ8WXB1 218 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 PPP1R14AQ96A00 147 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 INTS14Q96SY0 518 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 C20orf144Q9BQM9 153 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 MTHFD2LQ9H903 347 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 GPR173Q9NS66 373 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 B3GAT1Q9P2W7 334 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 GRHPRQ9UBQ7 328 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 GTF2A1LQ9UNN4 478 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 IER3IP1Q9Y5U9 82 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SPTY2D1-AS1A0A0U1RR47 76 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF705GA8MUZ8 300 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 PATE3B3GLJ2 98 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SRSF10O75494 262 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 RPP14O95059 124 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 TOMM40O96008 361 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 PNPP00491 289 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 LCATP04180 440 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 PFN1P07737 140 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 TFPI2P48307 235 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 RTP5Q14D33 572 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 C1orf100Q5SVJ3 147 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 MRPL2Q5T653 305 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 TMEM225Q6GV28 225 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SZRD1Q7Z422 152 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF429Q86V71 674 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF283Q8N7M2 679 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 CYB561D1Q8N8Q1 229 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 LRRC75AQ8NAA5 344 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 Q8NFD4 153 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 NUP43Q8NFH3 380 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ADAMTS15Q8TE58 950 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF845Q96IR2 970 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 C4orf45Q96LM5 186 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SDF2Q99470 211 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 OR2J1Q9GZK6 312 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 HSF4Q9ULV5 492 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 DYRK1BQ9Y463 629 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 CLDN16Q9Y5I7 305 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SCN3AQ9NY46 2000 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 H3BSH0 61 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 HPRT1P00492 218 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 CTSBP07858 339 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 MYF5P13349 255 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 FSTP19883 344 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ACAA2P42765 397 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 REEP5Q00765 189 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 PRDX4Q13162 271 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 KIAA0895LQ68EN5 471 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 Q6ZSR6 202 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF627Q7L945 461 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SLC16A9Q7RTY1 509 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 TMPRSS7Q7RTY8 843 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 DTX1Q86Y01 620 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 D2HGDHQ8N465 521 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SUMF2Q8NBJ7 301 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 PLPP5Q8NEB5 264 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 OR8G5Q8NG78 346 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 OR4D6Q8NGJ1 314 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms