RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PLA1AQ53H76 456 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 NKAPLQ5M9Q1 402 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 SIGIRRQ6IA17 410 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 RAB12Q6IQ22 244 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 MZT2BQ6NZ67 158 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 C6orf201Q7Z4U5 140 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 OR4S1Q8NGB4 309 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 OR56B1Q8NGI3 324 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 OR5A2Q8NGI9 324 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 OR8S1Q8NH09 359 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 C15orf40Q8WUR7 153 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 CPNE2Q96FN4 548 aaPredicted RBP3.53□□□□□ -1.84
MCF2-201ENST00000338585 WFIKKN1Q96NZ8 548 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 HIST1H2AAQ96QV6 131 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 SYT3Q9BQG1 590 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 URM1Q9BTM9 101 aaKnown RBP3.53□□□□□ -1.84
MCF2-201ENST00000338585 ADAT1Q9BUB4 502 aaKnown RBP3.53□□□□□ -1.84
MCF2-201ENST00000338585 TM2D1Q9BX74 207 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 BCL2L14Q9BZR8 327 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 OR51I2Q9H344 312 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 MTCH1Q9NZJ7 389 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 RABL2AQ9UBK7 228 aaPredicted RBP3.53□□□□□ -1.84
MCF2-201ENST00000338585 DUSP13Q9UII6 198 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 RABL2BQ9UNT1 228 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 USP24Q9UPU5 2620 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 MPC1Q9Y5U8 109 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 ICE1Q9Y2F5 2266 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 PLCE1Q9P212 2302 aa3.53□□□□□ -1.84
MCF2-201ENST00000338585 DPRXA6NFQ7 191 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 F5H5P2 479 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 M0QYG6 137 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 GEMIN2O14893 280 aaKnown RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 TIMM8AO60220 97 aaPredicted RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 CD3DP04234 171 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 CHRM2P08172 466 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 GTF2F2P13984 249 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 CPT2P23786 658 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 HLA-DMAP28067 261 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 DUSP1P28562 367 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 GCH1P30793 250 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 GNG3P63215 75 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 CD300CQ08708 224 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 DYRK1AQ13627 763 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 OR8G1Q15617 311 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ZNF718Q3SXZ3 478 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 HACD4Q5VWC8 232 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 OR52W1Q6IF63 320 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 RGS7BPQ6MZT1 257 aaPredicted RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 TRAPPC6BQ86SZ2 158 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 CDH24Q86UP0 819 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 OSR2Q8N2R0 312 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 PXT1Q8NFP0 134 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 OR8G5Q8NG78 346 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 OR4C16Q8NGL9 310 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 TMEM171Q8WVE6 324 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 MAFIPQ8WZ33 124 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 DYRK2Q92630 601 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 HDHD3Q9BSH5 251 aaPredicted RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 PECRQ9BY49 303 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 MCUBQ9NWR8 336 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ROS1P08922 2347 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ADGRG4Q8IZF6 3080 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 HIVEP3Q5T1R4 2406 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 TRAV6A0A075B6T7 132 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 OR5B21A6NL26 309 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ABCD4O14678 606 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 PFDN1O60925 122 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 GRPP07492 148 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 MELTFP08582 738 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 KITLGP21583 273 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 CHRNB4P30926 498 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ASCL1P50553 236 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 RBM11P57052 281 aaKnown RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 GMFBP60983 142 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 BSPH1Q075Z2 132 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ZNF154Q13106 437 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 C3orf36Q3SXR2 165 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 SPRNQ5BIV9 151 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 RSBN1Q5VWQ0 802 aaPredicted RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 PRAMEF6Q5VXH4 476 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 MBNL2Q5VZF2 373 aaKnown RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 PLET1Q6UQ28 207 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ZNF826PQ6ZT77 177 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 SCCPDHQ8NBX0 429 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 DUSP18Q8NEJ0 188 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 OR56B4Q8NH76 319 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 LINC01560Q8TB33 94 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ST8SIA4Q92187 359 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 MICU1Q9BPX6 476 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 NUDT16L1Q9BRJ7 211 aaKnown RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 FAAP24Q9BTP7 215 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 RTL8AQ9BWD3 113 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 CACNG6Q9BXT2 260 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 TINAGL1Q9GZM7 467 aaPredicted RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 SCPEP1Q9HB40 452 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 TMEM100Q9NV29 134 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 NUDT15Q9NV35 164 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 IL36GQ9NZH8 169 aa3.52□□□□□ -1.85
MCF2-201ENST00000338585 ZNF230Q9UIE0 474 aaPredicted RBP3.52□□□□□ -1.85
MCF2-201ENST00000338585 FLVCR2Q9UPI3 526 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms