RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SERPINA2P20848 420 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 DEFA1P59665 94 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 DEFA3P59666 94 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 FGF12P61328 243 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 ERVK11-1P61568 191 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 DGCR2P98153 550 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 EFNB3Q15768 340 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 HAGHLQ6PII5 290 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 LINC00596Q86U02 117 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 Q8IYB0 196 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 OSR2Q8N2R0 312 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 ACBD4Q8NC06 268 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 LINC01560Q8TB33 94 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 GPX8Q8TED1 209 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 PLPPR2Q96GM1 343 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 PLK3Q9H4B4 646 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 BANF2Q9H503 90 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 MTCH1Q9NZJ7 389 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 MYEF2Q9P2K5 600 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 ZNF107Q9UII5 783 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 HSF4Q9ULV5 492 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 FZR1Q9UM11 496 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 MRPS7Q9Y2R9 242 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 RNF115Q9Y4L5 304 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 ADGRG4Q8IZF6 3080 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 PLSCR5A0PG75 271 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 VSTM5A8MXK1 200 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 H0YL77 283 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 H3BUI4 141 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 H7C417 338 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 SIAH2O43255 324 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 PGA5P0DJD9 388 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 HIST1H1DP16402 221 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 PRSS3P35030 304 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 CFHR2P36980 270 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 PMELP40967 661 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 GATA4P43694 442 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 TMEM50BP56557 158 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 RBM11P57052 281 aaKnown RBP12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 MAB21L1Q13394 359 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 MADCAM1Q13477 382 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 DAZAP2Q15038 168 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 OXA1LQ15070 435 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 PNLIPRP3Q17RR3 467 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 ADAM5Q6NVV9 412 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 DTX3Q8N9I9 347 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 OR10K1Q8NGX5 313 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 OR52I2Q8NH67 350 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 FCAMRQ8WWV6 532 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 ST8SIA4Q92187 359 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 RAB3CQ96E17 227 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 DIRC2Q96SL1 478 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 NRIP2Q9BQI9 281 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 NICN1Q9BSH3 213 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 SELENOIQ9C0D9 397 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 ELL3Q9HB65 397 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 MTFP1Q9UDX5 166 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 DUSP13Q9UII6 198 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 ZDHHC8Q9ULC8 765 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 PLEKHA6Q9Y2H5 1048 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 ATP23Q9Y6H3 246 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 ZNF462Q96JM2 2506 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 DOPEY1Q5JWR5 2465 aa12.67□□□□□ -0.38
CCDC88C-202ENST00000334448 PLCE1Q9P212 2302 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 SERPINE3A8MV23 424 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 TRAPPC2LH3BP13 241 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 SYNGR1O43759 233 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 LANCL1O43813 399 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 HTR3BO95264 441 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 PLATP00750 562 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 LPLP06858 475 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 CD55P08174 381 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 VEGFCP49767 419 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 DYRK1AQ13627 763 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 IL13RA2Q14627 380 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 MPV17LQ2QL34 196 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 PLAC9Q5JTB6 97 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 C11orf53Q8IXP5 236 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 FBXL14Q8N1E6 418 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 POC1AQ8NBT0 407 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 SCCPDHQ8NBX0 429 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 C19orf18Q8NEA5 215 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 OR10AD1Q8NGE0 317 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM222BQ8WU58 562 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 SLAMF9Q96A28 289 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 SYT3Q9BQG1 590 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 C7orf50Q9BRJ6 194 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 IFT22Q9H7X7 185 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 HES4Q9HCC6 221 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 MSL2Q9HCI7 577 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 TAAR3PQ9P1P4 343 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 RCC2Q9P258 522 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 ANAPC10Q9UM13 185 aa12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 DIDO1Q9BTC0 2240 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-202ENST00000334448 RELNP78509 3460 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 E7EQL1 145 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 F5H5P2 479 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 PLA2G10O15496 165 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 SOCS1O15524 211 aa12.65□□□□□ -0.38
CCDC88C-202ENST00000334448 GOSR1O95249 250 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms