RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FUT7Q11130 342 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 TRILQ7L0X0 811 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 OR5A2Q8NGI9 324 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 CD226Q15762 336 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 ETV3LQ6ZN32 361 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 ADTRPQ96IZ2 230 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 ZNF346Q9UL40 294 aaKnown RBP12.84□□□□□ -0.35
COL7A1-201ENST00000328333 DAPP1Q9UN19 280 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 CBR3O75828 277 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 PIAS2O75928 621 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 SLC2A10O95528 541 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 CRYBB2P43320 205 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 PLP1P60201 277 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 SSX1Q16384 188 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 FAM206AQ9NX38 181 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 SDCBPO00560 298 aaPredicted RBP12.84□□□□□ -0.35
COL7A1-201ENST00000328333 HAAOP46952 286 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 YBX1P67809 324 aaKnown RBP12.84□□□□□ -0.35
COL7A1-201ENST00000328333 DEFB119Q8N690 84 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 CTAG2O75638 210 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 ACAA1P09110 424 aaPredicted RBP12.84□□□□□ -0.35
COL7A1-201ENST00000328333 SLC19A1P41440 591 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 BCDIN3DQ7Z5W3 292 aaKnown RBP12.84□□□□□ -0.35
COL7A1-201ENST00000328333 CHRNA10Q9GZZ6 450 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 PRO1933Q9H354 126 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 TMEM38BQ9NVV0 291 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 TECRQ9NZ01 308 aaKnown RBP12.84□□□□□ -0.35
COL7A1-201ENST00000328333 PRSS50Q9UI38 385 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 DHRS3O75911 302 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 GRPP07492 148 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 OR5AC1P0C628 307 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 LSM11P83369 360 aaKnown RBP eCLIP12.84□□□□□ -0.351e-6■■■■■ 28.2
COL7A1-201ENST00000328333 DERL3Q96Q80 235 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 TMPRSS13Q9BYE2 586 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 SAP30LQ9HAJ7 183 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 ZNF121P58317 390 aaPredicted RBP12.84□□□□□ -0.35
COL7A1-201ENST00000328333 GFYI3L273 518 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 RHBDL1O75783 438 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 ST3GAL2Q16842 350 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 TMEM230Q96A57 120 aa12.84□□□□□ -0.35
COL7A1-201ENST00000328333 PPICP45877 212 aa12.83□□□□□ -0.35
COL7A1-201ENST00000328333 SLC6A12P48065 614 aa12.83□□□□□ -0.35
COL7A1-201ENST00000328333 LRRC10Q5BKY1 277 aa12.83□□□□□ -0.35
COL7A1-201ENST00000328333 RNF165Q6ZSG1 346 aa12.83□□□□□ -0.35
COL7A1-201ENST00000328333 RBM45Q8IUH3 476 aaKnown RBP12.83□□□□□ -0.35
COL7A1-201ENST00000328333 VSTM2AQ8TAG5 236 aa12.83□□□□□ -0.35
COL7A1-201ENST00000328333 POM121Q96HA1 1249 aa12.83□□□□□ -0.35
COL7A1-201ENST00000328333 SLC35E3Q7Z769 313 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 MED12LQ86YW9 2145 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 ST6GAL1P15907 406 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 TNFRSF1AP19438 455 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 C5orf49A4QMS7 147 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 PNLIPRP2P54317 469 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 PPP1R1AQ13522 171 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 SLC39A5Q6ZMH5 540 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 TP53INP2Q8IXH6 220 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 MS4A6EQ96DS6 147 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 CXorf1O96002 111 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 NUFIP2Q7Z417 695 aaKnown RBP12.83□□□□□ -0.36
COL7A1-201ENST00000328333 C20orf196Q8IYI0 205 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 HIST1H1DP16402 221 aaKnown RBP12.83□□□□□ -0.36
COL7A1-201ENST00000328333 NAAAQ02083 359 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 FAM53BQ14153 422 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 ZNF385BQ569K4 471 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 ACSM5Q6NUN0 579 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 MRPL37Q9BZE1 423 aaKnown RBP12.83□□□□□ -0.36
COL7A1-201ENST00000328333 TRPM3Q9HCF6 1732 aaPredicted RBP12.83□□□□□ -0.36
COL7A1-201ENST00000328333 FRG2CA6NGY1 282 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 AKR7A3O95154 331 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 ACP1P24666 158 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 OR2B11Q5JQS5 317 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 FAAP20Q6NZ36 180 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 ZNF740Q8NDX6 193 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 P2RY12Q9H244 342 aa12.83□□□□□ -0.36
COL7A1-201ENST00000328333 EXOGQ9Y2C4 368 aaKnown RBP12.83□□□□□ -0.36
COL7A1-201ENST00000328333 ZNF716A6NP11 495 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 CST7O76096 145 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 FAM26DQ5JW98 314 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 NHLRC1Q6VVB1 395 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 LINC00596Q86U02 117 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 OR5M9Q8NGP3 310 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 RPS4Y2Q8TD47 263 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 GPX7Q96SL4 187 aaPredicted RBP12.82□□□□□ -0.36
COL7A1-201ENST00000328333 TMEM70Q9BUB7 260 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 ANXA10Q9UJ72 324 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 GEMIN2O14893 280 aaKnown RBP12.82□□□□□ -0.36
COL7A1-201ENST00000328333 PECRQ9BY49 303 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 DUSP13Q9UII6 198 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 MED13LQ71F56 2210 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 DIRC3C9JPN6 131 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 ALOX12BO75342 701 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 SFT2D2O95562 160 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 NKAIN1Q4KMZ8 207 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 C9orf62Q8N4C0 152 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 IL22RA2Q969J5 263 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 GAGE10A6NGK3 116 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 P01737 135 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 ANKRD55Q3KP44 614 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 MARVELD3Q96A59 401 aa12.82□□□□□ -0.36
COL7A1-201ENST00000328333 DYSFO75923 2080 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms