RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 OR2T10Q8NGZ9 312 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 MRM2Q9UI43 246 aaKnown RBP15.47■□□□□ 0.07
SYNPO-201ENST00000307662 TMEM30CPA0ZSE6 113 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 MFNGO00587 321 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 HYAL3O43820 417 aaPredicted RBP15.47■□□□□ 0.07
SYNPO-201ENST00000307662 CD81P60033 236 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 PKIAP61925 76 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 C20orf196Q8IYI0 205 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 NEIL1Q96FI4 390 aaPredicted RBP15.47■□□□□ 0.07
SYNPO-201ENST00000307662 ZNF576Q9H609 170 aa15.47■□□□□ 0.07
SYNPO-201ENST00000307662 FGF8P55075 233 aaPredicted RBP15.46■□□□□ 0.07
SYNPO-201ENST00000307662 SLC25A42Q86VD7 318 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.46■□□□□ 0.07
SYNPO-201ENST00000307662 FFAR1O14842 300 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 SPINK4O60575 86 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 ZGLP1P0C6A0 271 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 Q3ZCU0 254 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 KCNK15Q9H427 330 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 TMEM9BQ9NQ34 198 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 OR2W5A6NFC9 320 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 CDC34P49427 236 aaPredicted RBP15.46■□□□□ 0.07
SYNPO-201ENST00000307662 CCR5P51681 352 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 SMIM21Q3B7S5 101 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 Q6ZN92 141 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 OR10G4Q8NGN3 311 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 OR10G9Q8NGN4 311 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 OR10G7Q8NGN6 311 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 OR4C3Q8NH37 302 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 RPS4Y2Q8TD47 263 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 ANAPC16Q96DE5 110 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 SIRT7Q9NRC8 400 aa15.46■□□□□ 0.07
SYNPO-201ENST00000307662 DUSP2Q05923 314 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF718Q3SXZ3 478 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 BHLHA9Q7RTU4 235 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 ACY3Q96HD9 319 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 FOXB1Q99853 325 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 SLC25A22Q9H936 323 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 KIAA1456Q9P272 454 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 ERRFI1Q9UJM3 462 aaPredicted RBP15.46■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF391Q9UJN7 358 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 AMDHD2Q9Y303 409 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 SIT1Q9Y3P8 196 aa15.46■□□□□ 0.06
SYNPO-201ENST00000307662 CCR2P41597 374 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 DLK1P80370 383 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 PRICKLE4Q2TBC4 344 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 CEACAM16Q2WEN9 425 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF107Q9UII5 783 aaPredicted RBP15.45■□□□□ 0.06
SYNPO-201ENST00000307662 SCN9AQ15858 1988 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 C7orf66A4D0T2 115 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 MYBPHQ13203 477 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 PDCD1Q15116 288 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 SLC26A10Q8NG04 563 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 OR1N1Q8NGS0 311 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 SNX22Q96L94 193 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 CACNG5Q9UF02 275 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 TTRP02766 147 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 DHRS7BQ6IAN0 325 aaPredicted RBP15.45■□□□□ 0.06
SYNPO-201ENST00000307662 OVCH2Q7RTZ1 564 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 SLC45A2Q9UMX9 530 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF345Q14585 488 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 TUSC1Q2TAM9 212 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 DEFB108BQ8NET1 73 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 OR10A7Q8NGE5 316 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 LRFN3Q9BTN0 628 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 RAB33BQ9H082 229 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 SHROOM3Q8TF72 1996 aa15.45■□□□□ 0.06
SYNPO-201ENST00000307662 RER1O15258 196 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 RRP8O43159 456 aaKnown RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 LPAR6P43657 344 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 DYNLT3P51808 116 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 GFERP55789 205 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 PRDX4Q13162 271 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 C6orf15Q6UXA7 325 aaPredicted RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 ALKBH3Q96Q83 286 aaPredicted RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 WDR61Q9GZS3 305 aaKnown RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 GSX1Q9H4S2 264 aaPredicted RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 OCIAD1Q9NX40 245 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 STRCQ7RTU9 1775 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 GATCO43716 136 aaKnown RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 LANCL1O43813 399 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 ATP6V1FQ16864 119 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 ZNF770Q6IQ21 691 aaPredicted RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 TMEM65Q6PI78 240 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 Q8IYB0 196 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 CPEB3Q8NE35 698 aaKnown RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 UBE2ZQ9H832 354 aaPredicted RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 PARP11Q9NR21 331 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 CBR3O75828 277 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 YBX1P67809 324 aaKnown RBP15.44■□□□□ 0.06
SYNPO-201ENST00000307662 NHLH1Q02575 133 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 NHLH2Q02577 135 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 PECRQ9BY49 303 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 MANBALQ9NQG1 85 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 STUMQ69YW2 141 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 OR2V1Q8NHB1 315 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 ATP5SQ99766 215 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 PMS2P1A4D2B8 440 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 CRISP2P16562 243 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 CEACAM6P40199 344 aa15.44■□□□□ 0.06
SYNPO-201ENST00000307662 AMTP48728 403 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms