RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 MUL1Q969V5 352 aa18.69■□□□□ 0.58
HOXD4-201ENST00000306324 CEP19Q96LK0 163 aa18.69■□□□□ 0.58
HOXD4-201ENST00000306324 NKX3-1Q99801 234 aaPredicted RBP18.69■□□□□ 0.58
HOXD4-201ENST00000306324 PPIL3Q9H2H8 161 aaKnown RBP18.69■□□□□ 0.58
HOXD4-201ENST00000306324 TCF7L1Q9HCS4 588 aa18.69■□□□□ 0.58
HOXD4-201ENST00000306324 MTCH1Q9NZJ7 389 aa18.69■□□□□ 0.58
HOXD4-201ENST00000306324 ANGPTL7O43827 346 aa18.68■□□□□ 0.58
HOXD4-201ENST00000306324 UCHL1P09936 223 aa18.68■□□□□ 0.58
HOXD4-201ENST00000306324 RPS2P15880 293 aaKnown RBP18.68■□□□□ 0.58
HOXD4-201ENST00000306324 ZNF93P35789 620 aaPredicted RBP18.68■□□□□ 0.58
HOXD4-201ENST00000306324 CRIP3Q6Q6R5 217 aa18.68■□□□□ 0.58
HOXD4-201ENST00000306324 OR51F2Q8NH61 342 aa18.68■□□□□ 0.58
HOXD4-201ENST00000306324 SMR3AQ99954 134 aa18.68■□□□□ 0.58
HOXD4-201ENST00000306324 NRIP2Q9BQI9 281 aa18.68■□□□□ 0.58
HOXD4-201ENST00000306324 FAM192AQ9GZU8 254 aa18.68■□□□□ 0.58
HOXD4-201ENST00000306324 PATZ1Q9HBE1 687 aaKnown RBP18.68■□□□□ 0.58
HOXD4-201ENST00000306324 TRAPPC2LH3BP13 241 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 NOS1APO75052 506 aaPredicted RBP18.67■□□□□ 0.58
HOXD4-201ENST00000306324 TMEM225BP0DP42 221 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 SMIM21Q3B7S5 101 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 LYPD2Q6UXB3 125 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 ACP7Q6ZNF0 438 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 RASL12Q9NYN1 266 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 NLKQ9UBE8 527 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 MIOXQ9UGB7 285 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 WNK2Q9Y3S1 2297 aa18.67■□□□□ 0.58
HOXD4-201ENST00000306324 FAM157AC9JC47 383 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 ARL6IP5O75915 188 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 ACAA1P09110 424 aaPredicted RBP18.66■□□□□ 0.58
HOXD4-201ENST00000306324 IGHV4-31P0DP07 118 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 SRMP19623 302 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 ZP1P60852 638 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 JAGN1Q8N5M9 183 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 TNFAIP8L1Q8WVP5 186 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 PHYHIPQ92561 330 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 C12orf43Q96C57 262 aaKnown RBP18.66■□□□□ 0.58
HOXD4-201ENST00000306324 SLITRK2Q9H156 845 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 SMURF1Q9HCE7 757 aa18.66■□□□□ 0.58
HOXD4-201ENST00000306324 TRIM64CA6NLI5 447 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 OR2AT4A6NND4 320 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 F8VVB4 439 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 F8VWA3 439 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 ADAM20O43506 726 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 NDUFA2O43678 99 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 BCL3P20749 454 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 CALRP27797 417 aaKnown RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 NPBWR2P48146 333 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 GZMKP49863 264 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 ERVK11-1P61568 191 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 NLRC3Q7RTR2 1065 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 PNLDC1Q8NA58 520 aaKnown RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 NEIL1Q96FI4 390 aaPredicted RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 LPAR2Q9HBW0 351 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 EXOSC4Q9NPD3 245 aaKnown RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 IGKV1-12A0A0C4DH73 117 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 TMPRSS2O15393 492 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 IGKV1D-12P01611 117 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 WNT2P09544 360 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 SMIM18P0DKX4 95 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 OR3A4PP47883 348 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 SEC61A1P61619 476 aaKnown RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 STUMQ69YW2 141 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 CD200R1LQ6Q8B3 271 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 Q8IYB0 196 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 NKAIN3Q8N8D7 197 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 OR8B3Q8NGG8 313 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 EMG1Q92979 244 aaKnown RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 OR8B2Q96RD0 313 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 CCL13Q99616 98 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 ELL3Q9HB65 397 aaPredicted RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 HES4Q9HCC6 221 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 RBFOX1Q9NWB1 397 aaKnown RBP18.65■□□□□ 0.58
HOXD4-201ENST00000306324 STUB1Q9UNE7 303 aa18.65■□□□□ 0.58
HOXD4-201ENST00000306324 TEP1Q99973 2627 aaKnown RBP18.64■□□□□ 0.57
HOXD4-201ENST00000306324 TRDV1A0A1B0GX56 115 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 MEGF11A6BM72 1044 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 F5H0A9 414 aaPredicted RBP18.64■□□□□ 0.57
HOXD4-201ENST00000306324 TFF1P04155 84 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 CALCBP10092 127 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 PSG2P11465 335 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 CD36P16671 472 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 GABRA2P47869 451 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 ESCO2Q56NI9 601 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 CYB5R2Q6BCY4 276 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 C1QL2Q7Z5L3 287 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 BIVMQ86UB2 503 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 SAXO1Q8IYX7 474 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 ZSCAN4Q8NAM6 433 aaPredicted RBP18.64■□□□□ 0.57
HOXD4-201ENST00000306324 MSI2Q96DH6 328 aaKnown RBP18.64■□□□□ 0.57
HOXD4-201ENST00000306324 OR14J1Q9UGF5 321 aa18.64■□□□□ 0.57
HOXD4-201ENST00000306324 RFPL4AA6NLU0 287 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 B4DSR2 109 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 RFPL4AL1F8VTS6 287 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 TNFRSF13BO14836 293 aaPredicted RBP18.63■□□□□ 0.57
HOXD4-201ENST00000306324 ADRA2CP18825 462 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 PTGFRP43088 359 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 C22orf42Q6IC83 251 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 LRRTM1Q86UE6 522 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 LINC01356Q8N9X3 169 aa18.63■□□□□ 0.57
HOXD4-201ENST00000306324 ANGPTL6Q8NI99 470 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms