RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 LILRB1Q8NHL6 650 aaPredicted RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 FCRL1Q96LA6 429 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 ZNF385AQ96PM9 386 aaKnown RBP6.9□□□□□ -1.3
SCN9A-201ENST00000303354 ASCL3Q9NQ33 180 aa6.9□□□□□ -1.3
SCN9A-201ENST00000303354 IGHV3-66A0A0C4DH42 116 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 RFPL4AA6NLU0 287 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 RFPL4AL1F8VTS6 287 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 IGHV4-34P06331 123 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 BPIFB3P59826 476 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 RHBDD2Q6NTF9 364 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 VN1R4Q7Z5H5 301 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 MN1Q10571 1320 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF716A6NP11 495 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 PEX11BO96011 259 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 CHRM2P08172 466 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 ATP5J2P56134 94 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 FAM3AP98173 230 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 SLC25A30Q5SVS4 291 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 GLDNQ6ZMI3 551 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-201ENST00000303354 OR4A4PQ8NGN8 299 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 OR2M2Q96R28 347 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 ACTR3CQ9C0K3 210 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-201ENST00000303354 ETV7Q9Y603 341 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 A0A0A6YYJ9 748 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 TMEM272A0A1B0GTI8 110 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF137PP52743 207 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 NRAPQ86VF7 1730 aa6.9□□□□□ -1.31
SCN9A-201ENST00000303354 SIRT3Q9NTG7 399 aaPredicted RBP6.9□□□□□ -1.31
SCN9A-201ENST00000303354 TRAV38-1A0A0B4J264 116 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 PIGYQ3MUY2 71 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF826PQ6ZT77 177 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 MRGPRGQ86SM5 289 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 CDH26Q8IXH8 852 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 OR8B12Q8NGG6 310 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 CTDSP1Q9GZU7 261 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 GOLGA4Q13439 2230 aaKnown RBP6.89□□□□□ -1.31
SCN9A-201ENST00000303354 A0A0D9SG52 128 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ANKRD34CP0C6C1 535 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 PTTG1IPP53801 180 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 RFPL4BQ6ZWI9 263 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 RTN4IP1Q8WWV3 396 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-201ENST00000303354 CORO2AQ92828 525 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 AAMDCQ9H7C9 122 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 S4R3C0 116 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 TRBV5-4A0A0C4DH59 114 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 SULT1C4O75897 302 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 METTL15P1P0C7V9 234 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ERVFC1-1P60608 527 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 LRP11Q86VZ4 500 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF768Q9H5H4 540 aaKnown RBP6.89□□□□□ -1.31
SCN9A-201ENST00000303354 AMDHD2Q9Y303 409 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ITGB4P16144 1822 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 HBE1P02100 147 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 OR4E1P0C645 316 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 TAS2R45P59539 299 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 BTNL8Q6UX41 500 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 TGIF2Q9GZN2 237 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 IL17BQ9UHF5 180 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 PAPPA2Q9BXP8 1791 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 TRDV1A0A1B0GX56 115 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 hADV38S2A0JD32 116 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 FFAR4Q5NUL3 377 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ABI3BPQ7Z7G0 1075 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 LHX4Q969G2 390 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF764Q96H86 408 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-201ENST00000303354 CNTD2Q9H8S5 307 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 LSM2Q9Y333 95 aaKnown RBP6.89□□□□□ -1.31
SCN9A-201ENST00000303354 HAND1O96004 215 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 SULT1A3P0DMM9 295 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 SULT1A4P0DMN0 295 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 RPL12P30050 165 aaKnown RBP6.89□□□□□ -1.31
SCN9A-201ENST00000303354 GP2P55259 537 aaKnown RBP6.89□□□□□ -1.31
SCN9A-201ENST00000303354 CDK5R1Q15078 307 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 GAB4Q2WGN9 574 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ARL6IP6Q8N6S5 226 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 MOB1AQ9H8S9 216 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 YAE1D1Q9NRH1 226 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 PMS2P2O95744 297 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 CTXN2P0C2S0 81 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 SOHLH1Q5JUK2 328 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 SLC25A45Q8N413 288 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 OTOSQ8NHW6 89 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 CLN8Q9UBY8 286 aa6.89□□□□□ -1.31
SCN9A-201ENST00000303354 ZAR1LA6NP61 321 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 ETV6P41212 452 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 PTGFRP43088 359 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 MYO9BQ13459 2157 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 LOC102723971A0A1B0GUV8 181 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 FAM24AA6NFZ4 105 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 ZNF727A8MUV8 499 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 PF4P02776 101 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 CD81P60033 236 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 ARF6P62330 175 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 CDC20Q12834 499 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 GPNMBQ14956 572 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 RPUSD3Q6P087 351 aaKnown RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 CENPVQ7Z7K6 275 aaPredicted RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 DND1Q8IYX4 353 aaKnown RBP6.88□□□□□ -1.31
SCN9A-201ENST00000303354 RNF141Q8WVD5 230 aa6.88□□□□□ -1.31
SCN9A-201ENST00000303354 SOSTQ9BQB4 213 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms