RNA–Protein interactions for RNA: ENST00000289292.11

SHROOM4-201, Transcript of shroom family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM4, Length 6,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-201ENST00000289292 ZFP36L2P47974 494 aaKnown RBP13.65□□□□□ -0.22
SHROOM4-201ENST00000289292 S100A7AQ86SG5 101 aa13.65□□□□□ -0.22
SHROOM4-201ENST00000289292 NAA60Q9H7X0 242 aa13.65□□□□□ -0.22
SHROOM4-201ENST00000289292 PRDX4Q13162 271 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 RAB35Q15286 201 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 KLHDC1Q8N7A1 406 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 NPEPL1Q8NDH3 523 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 ERRFI1Q9UJM3 462 aaPredicted RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 LOC102724200A0A096LPH7 203 aaPredicted RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 CLN3Q13286 438 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 KCNE4Q8WWG9 221 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 GALMQ96C23 342 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 MRPS24Q96EL2 167 aaKnown RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 FOXB1Q99853 325 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 CENPVL1A0A0U1RR11 272 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 KIAA1324LA8MWY0 1029 aaPredicted RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 MASP2O00187 686 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 CXCL2P19875 107 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 RAC1P63000 192 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 FAM109BQ6ICB4 259 aaPredicted RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 S1PR3Q99500 378 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 SARGQ9BW04 601 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 CST2P09228 141 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 CISD3P0C7P0 127 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 FUT3P21217 361 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 TAS2R45P59539 299 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 POLR2GP62487 172 aaKnown RBP eCLIP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 WIPI1Q5MNZ9 446 aaPredicted RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 LHX8Q68G74 356 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 RNASEKQ6P5S7 137 aaKnown RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 LSRQ86X29 649 aaPredicted RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 ZPLD1Q8TCW7 415 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 RPP25Q9BUL9 199 aaKnown RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 TMEM127O75204 238 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 COTL1Q14019 142 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 RTL8BQ17RB0 113 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 CISD2Q8N5K1 135 aaKnown RBP13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 OPN4Q9UHM6 478 aa13.64□□□□□ -0.23
SHROOM4-201ENST00000289292 A0A1W2PPE2 198 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 CXCL10P02778 98 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 SUB1P53999 127 aaKnown RBP eCLIP13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 C21orf58P58505 322 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 ARL16Q0P5N6 197 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 ZIC1Q15915 447 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 OR8B12Q8NGG6 310 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 PHYHIPLQ96FC7 376 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 ZNF98A6NK75 572 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 CLDN34H7C241 214 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 COX7A2P2O60397 106 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 IGHV3-13P01766 116 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 IGHV3-7P01780 117 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 CD226Q15762 336 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 ACSM6Q6P461 480 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 Q7L0L9 218 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 IGHV3-43A0A0B4J1X8 118 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 LRRC30A6NM36 301 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 IGHV3-43DP0DP04 118 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 ZNF362Q5T0B9 420 aaPredicted RBP13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 OR1L3Q8NH93 324 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 SNX22Q96L94 193 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 PACRGQ96M98 296 aaPredicted RBP13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 LPAR3Q9UBY5 353 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 HDGFL3Q9Y3E1 203 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 DHRS3O75911 302 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 ZBTB25P24278 435 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 IL3RAP26951 378 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 CCR5P51681 352 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 TUSC1Q2TAM9 212 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 ALG1L2C9J202 215 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 SLC38A11Q08AI6 406 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 DYRK2Q92630 601 aa13.63□□□□□ -0.23
SHROOM4-201ENST00000289292 YIF1AO95070 293 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 INHBBP09529 407 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 GABRG2P18507 467 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 GNG10P50151 68 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 FAM78BQ5VT40 261 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 MYPOPQ86VE0 399 aaPredicted RBP13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 PP6455Q8WZ26 134 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 USP54Q70EL1 1684 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 SPTY2D1-AS1A0A0U1RR47 76 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 MAP1LC3B2A6NCE7 125 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 GEMIN2O14893 280 aaKnown RBP13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 GLB1P16278 677 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 RCC1P18754 421 aaPredicted RBP13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 BTNL3Q6UXE8 466 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 WNT2BQ93097 391 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 SPACA9Q96E40 222 aaPredicted RBP13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 TAAR9Q96RI9 348 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 MAP1LC3BQ9GZQ8 125 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 FAM60AQ9NP50 221 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 MFRPQ9BY79 579 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 CACNG5Q9UF02 275 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 RBFOX3A6NFN3 312 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 GYPAP02724 150 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 SMIM6P0DI80 62 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 ZNF25P17030 456 aaPredicted RBP13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 TMEM183BQ1AE95 376 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 TMEM241Q24JQ0 296 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 OR2V1Q8NHB1 315 aa13.62□□□□□ -0.23
SHROOM4-201ENST00000289292 RASL12Q9NYN1 266 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms