RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MTCH1Q9NZJ7 389 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 FBLN5Q9UBX5 448 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 DUSP13Q9UII6 198 aa14.12□□□□□ -0.15
USP4-201ENST00000265560 USP24Q9UPU5 2620 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 PQLC2LA1A4F0 135 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 UBE2QL1A1L167 161 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 OR7C1O76099 320 aaPredicted RBP14.11□□□□□ -0.15
USP4-201ENST00000265560 CHRM2P08172 466 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 CSF1P09603 554 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 ZNF35P13682 527 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 CAPZA1P52907 286 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 OR52B4Q8NGK2 314 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 FBXW5Q969U6 566 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 Q96M66 194 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 MICU1Q9BPX6 476 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 PECRQ9BY49 303 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 ETAA1Q9NY74 926 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 RABL2AQ9UBK7 228 aaPredicted RBP14.11□□□□□ -0.15
USP4-201ENST00000265560 RABL2BQ9UNT1 228 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 DCHS2Q6V1P9 2916 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 IGHV2OR16-5A0A0B4J2B6 119 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 SDCBPO00560 298 aaPredicted RBP14.11□□□□□ -0.15
USP4-201ENST00000265560 OPRM1P35372 400 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 ALDH3B1P43353 468 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 UBE2MP61081 183 aaKnown RBP14.11□□□□□ -0.15
USP4-201ENST00000265560 SNAPC3Q92966 411 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 NUBP2Q9Y5Y2 271 aa14.11□□□□□ -0.15
USP4-201ENST00000265560 GRPP07492 148 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 ACTBP60709 375 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 ACTG1P63261 375 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 MSMPQ1L6U9 139 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 ATAD3CQ5T2N8 411 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 BTN2A1Q7KYR7 527 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 LRP11Q86VZ4 500 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 FTMTQ8N4E7 242 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 FAM89BQ8N5H3 189 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 CSNK2A3Q8NEV1 391 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 CAPSLQ8WWF8 208 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 OR5P3Q8WZ94 311 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 A0A0A6YYH2 397 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 A6NJ64 397 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 MFNGO00587 321 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 CPT2P23786 658 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 ST3GAL2Q16842 350 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 IDO2Q6ZQW0 420 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 CCDC36Q8IYA8 594 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 OSR2Q8N2R0 312 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 RELL2Q8NC24 303 aaPredicted RBP14.1□□□□□ -0.15
USP4-201ENST00000265560 OR6F1Q8NGZ6 308 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 GTF3AQ92664 365 aaKnown RBP14.1□□□□□ -0.15
USP4-201ENST00000265560 SFXN3Q9BWM7 321 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 IGKV1D-8A0A087WSZ0 117 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 DHFRP00374 187 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 CST4P01036 141 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 TMED4Q7Z7H5 227 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 WDR86Q86TI4 376 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 BPIFB2Q8N4F0 458 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 C1orf162Q8NEQ5 155 aaPredicted RBP14.1□□□□□ -0.15
USP4-201ENST00000265560 STEAP2Q8NFT2 490 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 SULT4A1Q9BR01 284 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 OBP2BQ9NPH6 170 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 FLNCQ14315 2725 aa14.1□□□□□ -0.15
USP4-201ENST00000265560 CCKARP32238 428 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 TAS2R19P59542 299 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 UXS1Q8NBZ7 420 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 MUCL1Q96DR8 90 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 MARS2Q96GW9 593 aaKnown RBP14.09□□□□□ -0.15
USP4-201ENST00000265560 ST6GAL2Q96JF0 529 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 GHRLQ9UBU3 117 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 CRHP06850 196 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 FCN2Q15485 313 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 C7orf50Q9BRJ6 194 aaKnown RBP14.09□□□□□ -0.15
USP4-201ENST00000265560 SCPEP1Q9HB40 452 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 UFSP2Q9NUQ7 469 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 TAS2R8Q9NYW2 309 aa14.09□□□□□ -0.15
USP4-201ENST00000265560 MELTFP08582 738 aa14.08□□□□□ -0.15
USP4-201ENST00000265560 CXCL3P19876 107 aa14.08□□□□□ -0.15
USP4-201ENST00000265560 DAZAP2Q15038 168 aaPredicted RBP14.08□□□□□ -0.15
USP4-201ENST00000265560 PPA1Q15181 289 aa14.08□□□□□ -0.15
USP4-201ENST00000265560 FBXW12Q6X9E4 464 aa14.08□□□□□ -0.15
USP4-201ENST00000265560 ZNF826PQ6ZT77 177 aa14.08□□□□□ -0.15
USP4-201ENST00000265560 FOXI3A8MTJ6 420 aaPredicted RBP14.08□□□□□ -0.16
USP4-201ENST00000265560 F5H5P2 479 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 CDIPTO14735 213 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 MSTNO14793 375 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 NAAAQ02083 359 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 PIAS4Q8N2W9 510 aaPredicted RBP14.08□□□□□ -0.16
USP4-201ENST00000265560 ADAT1Q9BUB4 502 aaKnown RBP14.08□□□□□ -0.16
USP4-201ENST00000265560 AK3Q9UIJ7 227 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 ATP6V1G2-DDX39BF2Z307 99 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 AKR7A2O43488 359 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 IGLV1-44P01699 117 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 FAUP35544 74 aaKnown RBP14.08□□□□□ -0.16
USP4-201ENST00000265560 MICBQ29980 383 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 RNASE10Q5GAN6 216 aaKnown RBP14.08□□□□□ -0.16
USP4-201ENST00000265560 OR4K15Q8NH41 348 aa14.08□□□□□ -0.16
USP4-201ENST00000265560 MOV10Q9HCE1 1003 aaKnown RBP14.08□□□□□ -0.16
USP4-201ENST00000265560 HMX3A6NHT5 357 aa14.07□□□□□ -0.16
USP4-201ENST00000265560 TIMM8AO60220 97 aaPredicted RBP14.07□□□□□ -0.16
USP4-201ENST00000265560 ICMTO60725 284 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms