RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ZNF511Q8NB15 262 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 NOL4LQ96MY1 436 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-217ENST00000637988 YAE1D1Q9NRH1 226 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 KPTNQ9Y664 436 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 A1L4Q6 167 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 PPP5D1E7EU14 171 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SMLR1H3BR10 107 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 GALR1P47211 349 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 MEOX2P50222 304 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 FNDC7Q5VTL7 733 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 LYPD4Q6UWN0 246 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 STPG3Q8N7X2 389 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 MARCH1Q8TCQ1 289 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 PTP4A1Q93096 173 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 GPR78Q96P69 363 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 DERL3Q96Q80 235 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 RNF2Q99496 336 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 SHANK3Q9BYB0 1731 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 BRWD3Q6RI45 1802 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1W2PR48 441 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1W2PRD5 423 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1W2PRF3 423 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1W2PRM7 423 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 CDRT15L2A8MXV6 281 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 MPGP29372 298 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 UBE2DNLQ8IWF7 75 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 OR52N1Q8NH53 320 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 CMBLQ96DG6 245 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 TVP23CQ96ET8 276 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 DOK1Q99704 481 aa5.49□□□□□ -1.53
SCN1A-217ENST00000637988 AHRRA9YTQ3 701 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 FOXH1O75593 365 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 CEACAM5P06731 702 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 SSTR2P30874 369 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PNLIPRP3Q17RR3 467 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 C1orf53Q5VUE5 145 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PAQR6Q6TCH4 344 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ACOT7LQ6ZUV0 252 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 AMIGO3Q86WK7 504 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR1L3Q8NH93 324 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 BLNKQ8WV28 456 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 R3HDMLQ9H3Y0 253 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 NDUFB11Q9NX14 153 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 UPK1BO75841 260 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 IAPPP10997 89 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 GPX3P22352 226 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 NUBP1P53384 320 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PIGPP57054 158 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR2B8PP59922 312 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 FAM106AQ4KMX7 169 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR2G6Q5TZ20 316 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 INO80CQ6PI98 192 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 DDA1Q9BW61 102 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PLEKHA2Q9HB19 425 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 SLC25A10Q9UBX3 287 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 VSIG4Q9Y279 399 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 NSG2Q9Y328 171 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 B4E171 279 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 GATCO43716 136 aaKnown RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 HIST1H1CP16403 213 aaKnown RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ALOX5APP20292 161 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 TSPAN7P41732 249 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PRSS12P56730 875 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR2T2Q6IF00 324 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR10J6PQ8NGY7 276 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 YIPF5Q969M3 257 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 DUS3LQ96G46 650 aaKnown RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 P2RX4Q99571 388 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 SLC29A1Q99808 456 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF426Q9BUY5 554 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ZMAT3Q9HA38 289 aaKnown RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PARP11Q9NR21 331 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ACER3Q9NUN7 267 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 CGGBP1Q9UFW8 167 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 MIOXQ9UGB7 285 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 IGHV5-10-1A0A0J9YXX1 117 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 MAGEA5P43359 124 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 GLCCI1Q86VQ1 547 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR1L6Q8NGR2 347 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ARRDC2Q8TBH0 407 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 FCGR3BO75015 233 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF17P17021 662 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 CLDN12P56749 244 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 RAC3P60763 192 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 TOMM34Q15785 309 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PDPNQ86YL7 162 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 DUX5Q96PT3 197 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 SRRQ9GZT4 340 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 MED29Q9NX70 200 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PPM1DO15297 605 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR13C7P0DN81 318 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 SORDQ00796 357 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 TMEM268Q5VZI3 342 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 LHX8Q68G74 356 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PWWP2BQ6NUJ5 590 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 CYHR1Q6ZMK1 362 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 RFLNAQ6ZTI6 216 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 GTSCR1Q86UQ5 136 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 OR8I2Q8N0Y5 310 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 ATOH8Q96SQ7 321 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms