RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 MAP2K3P46734 347 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 CEBPDP49716 269 aaPredicted RBP15.66■□□□□ 0.1
CLN3-262ENST00000637699 PSMA6P60900 246 aaKnown RBP15.66■□□□□ 0.1
CLN3-262ENST00000637699 ARSJQ5FYB0 599 aaPredicted RBP15.66■□□□□ 0.1
CLN3-262ENST00000637699 ACP7Q6ZNF0 438 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 MOB3CQ70IA8 216 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 WIPF2Q8TF74 440 aaPredicted RBP15.66■□□□□ 0.1
CLN3-262ENST00000637699 PRSS22Q9GZN4 317 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 C1orf21Q9H246 121 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 MUC13Q9H3R2 512 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 MAGIXQ9H6Y5 334 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 ABCB10Q9NRK6 738 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 RASL12Q9NYN1 266 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 KLHDC2Q9Y2U9 406 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 DNAH9Q9NYC9 4486 aa15.66■□□□□ 0.1
CLN3-262ENST00000637699 A0A1W2PRX2 142 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 A6NDX4 124 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 SLC1A7O00341 560 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 ZNF273Q14593 569 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 SSX2Q16385 188 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 MICAQ29983 383 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 Q6ZS46 218 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 ZNF561Q8N587 486 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 ZNF454Q8N9F8 522 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 OR5A2Q8NGI9 324 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 TEX47Q8TBZ9 253 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 RPS4Y2Q8TD47 263 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 DGCR6LQ9BY27 220 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 WNT10AQ9GZT5 417 aa15.65■□□□□ 0.1
CLN3-262ENST00000637699 OR5B21A6NL26 309 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 ARG1P05089 322 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 PIPP12273 146 aaPredicted RBP15.64■□□□□ 0.09
CLN3-262ENST00000637699 FAHP16930 419 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 SMIM21Q3B7S5 101 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 PLCXD3Q63HM9 321 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 PLBD1Q6P4A8 553 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 COMMD2Q86X83 199 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 POC1AQ8NBT0 407 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 NIPAL2Q9H841 368 aa15.64■□□□□ 0.09
CLN3-262ENST00000637699 SAMHD1Q9Y3Z3 626 aaKnown RBP15.64■□□□□ 0.09
CLN3-262ENST00000637699 H3BN98 237 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 BLCAPP62952 87 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 TMEM95Q3KNT9 176 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 OR2T5Q6IEZ7 315 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 C11orf87Q6NUJ2 197 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 KRT74Q7RTS7 529 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 KRT77Q7Z794 578 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 BATF2Q8N1L9 274 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 WFDC9Q8NEX5 89 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 OR2T29Q8NH02 315 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 CCDC124Q96CT7 223 aaKnown RBP15.63■□□□□ 0.09
CLN3-262ENST00000637699 ASB9Q96DX5 294 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 MALSU1Q96EH3 234 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 NIPSNAP1Q9BPW8 284 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 THTPAQ9BU02 230 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 REEP1Q9H902 201 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 PITPNC1Q9UKF7 332 aa15.63■□□□□ 0.09
CLN3-262ENST00000637699 MEX3AA1L020 520 aaKnown RBP15.62■□□□□ 0.09
CLN3-262ENST00000637699 PRR23D1E9PI22 279 aaPredicted RBP15.62■□□□□ 0.09
CLN3-262ENST00000637699 K7EIL1 84 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 GSC2O15499 205 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 SYNGR1O43759 233 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 PRR23D2P0DMB1 279 aaPredicted RBP15.62■□□□□ 0.09
CLN3-262ENST00000637699 VDAC2P45880 294 aaPredicted RBP15.62■□□□□ 0.09
CLN3-262ENST00000637699 HCCSP53701 268 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 RIPPLY1Q0D2K3 151 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 FAM98BQ52LJ0 330 aaKnown RBP15.62■□□□□ 0.09
CLN3-262ENST00000637699 DEFB121Q5J5C9 76 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 LDLRAD2Q5SZI1 272 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 TRPM8Q7Z2W7 1104 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 FOXRED1Q96CU9 486 aaPredicted RBP15.62■□□□□ 0.09
CLN3-262ENST00000637699 OR14J1Q9UGF5 321 aa15.62■□□□□ 0.09
CLN3-262ENST00000637699 TBL2Q9Y4P3 447 aaKnown RBP15.62■□□□□ 0.09
CLN3-262ENST00000637699 A0A0U1RQV5 110 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 C17orf98A8MV24 154 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 PSMD9O00233 223 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 NXPH2O95156 264 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 TK1P04183 234 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 PGA5P0DJD9 388 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 VSIG8P0DPA2 414 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 JUNBP17275 347 aaPredicted RBP15.61■□□□□ 0.09
CLN3-262ENST00000637699 DLX6P56179 175 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 DYNC1I2Q13409 638 aaKnown RBP15.61■□□□□ 0.09
CLN3-262ENST00000637699 CALHM1Q8IU99 346 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 OR5AU1Q8NGC0 362 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 OR10G2Q8NGC3 310 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 OR13D1Q8NGV5 346 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 OR51E1Q8TCB6 317 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 BCAS4Q8TDM0 211 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 GPR84Q9NQS5 396 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 LAMP5Q9UJQ1 280 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 PIGLQ9Y2B2 252 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 TENM3Q9P273 2699 aa15.61■□□□□ 0.09
CLN3-262ENST00000637699 TMEM269A0A1B0GVZ9 245 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 ODF3BA8MYP8 253 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 RAP2AP10114 183 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 PF4V1P10720 104 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 ALOX5APP20292 161 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 HAAOP46952 286 aa15.6■□□□□ 0.09
CLN3-262ENST00000637699 ZNF684Q5T5D7 378 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms