RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 GATAD2BQ8WXI9 593 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 C22orf15Q8WYQ4 148 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 RNF170Q96K19 258 aa15.96■□□□□ 0.15
CLN3-260ENST00000637578 FAM71F1Q96KD3 344 aaPredicted RBP15.96■□□□□ 0.15
CLN3-260ENST00000637578 A0A1B0GTI1 187 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 PLATP00750 562 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 LIPFP07098 398 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 MRPL28Q13084 256 aaKnown RBP15.96■□□□□ 0.14
CLN3-260ENST00000637578 ALKBH1Q13686 389 aaKnown RBP15.96■□□□□ 0.14
CLN3-260ENST00000637578 CEACAM21Q3KPI0 293 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 ATPAF1Q5TC12 328 aaPredicted RBP15.96■□□□□ 0.14
CLN3-260ENST00000637578 RNLSQ5VYX0 342 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 Q6ZSR3 168 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 DOK3Q7L591 496 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 NANOGP1Q8N7R0 232 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 SCCPDHQ8NBX0 429 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 BABAM2Q9NXR7 383 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 ERGIC3Q9Y282 383 aa15.96■□□□□ 0.14
CLN3-260ENST00000637578 IGHV3OR15-7A0A075B7D8 119 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 TRIM77I1YAP6 450 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 LALBAP00709 142 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 IGHV4-38-2P0DP08 117 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 EEF1B2P24534 225 aaKnown RBP15.95■□□□□ 0.14
CLN3-260ENST00000637578 TGM4P49221 684 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 CCR9P51686 369 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 RIPPLY1Q0D2K3 151 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 DOC2BQ14184 412 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 IRF3Q14653 427 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 PRSS48Q7RTY5 328 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 RDH10Q8IZV5 341 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 BCL6BQ8N143 479 aaPredicted RBP15.95■□□□□ 0.14
CLN3-260ENST00000637578 RPL3LQ92901 407 aaKnown RBP15.95■□□□□ 0.14
CLN3-260ENST00000637578 TECTBQ96PL2 329 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 CCDC90BQ9GZT6 254 aa15.95■□□□□ 0.14
CLN3-260ENST00000637578 OR4C45A6NMZ5 311 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 H3BSH0 61 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 DVL1O14640 695 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 TMPRSS2O15393 492 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 DHRS3O75911 302 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 AMY2BP19961 511 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 WNT4P56705 351 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 FGF12P61328 243 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 TMEM42Q69YG0 159 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 SIGLECL1Q8N7X8 197 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 OR5A2Q8NGI9 324 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 HAVCR2Q8TDQ0 301 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 SEH1LQ96EE3 360 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 HIST1H2AAQ96QV6 131 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 MND1Q9BWT6 205 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 YTHDF1Q9BYJ9 559 aaKnown RBP15.94■□□□□ 0.14
CLN3-260ENST00000637578 OR51I2Q9H344 312 aa15.94■□□□□ 0.14
CLN3-260ENST00000637578 LOC107986453A0A1B0GWG9 222 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 MTRF1O75570 445 aaKnown RBP15.93■□□□□ 0.14
CLN3-260ENST00000637578 ECDO95905 644 aaPredicted RBP15.93■□□□□ 0.14
CLN3-260ENST00000637578 UBCP0CG48 685 aaKnown RBP15.93■□□□□ 0.14
CLN3-260ENST00000637578 MMP9P14780 707 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 CCL1P22362 96 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 GPM6AP51674 278 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 GABARAPL2P60520 117 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 GNG3P63215 75 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 CCDC58Q4VC31 144 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 STUMQ69YW2 141 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 ZNF48Q96MX3 618 aaPredicted RBP15.93■□□□□ 0.14
CLN3-260ENST00000637578 CCL13Q99616 98 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 DNTTIP1Q9H147 329 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 WDR13Q9H1Z4 485 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 ENPP5Q9UJA9 477 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 PIGLQ9Y2B2 252 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 SIRT4Q9Y6E7 314 aaPredicted RBP15.93■□□□□ 0.14
CLN3-260ENST00000637578 V9GYS6 101 aa15.93■□□□□ 0.14
CLN3-260ENST00000637578 A0A1B0GVI7 797 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 ZNF879B4DU55 563 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 SYT7O43581 403 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 ZFPL1O95159 310 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 FAHP16930 419 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 COMPP49747 757 aaPredicted RBP15.92■□□□□ 0.14
CLN3-260ENST00000637578 CDK5R1Q15078 307 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 RPL22L1Q6P5R6 122 aaKnown RBP15.92■□□□□ 0.14
CLN3-260ENST00000637578 ZNF676Q8N7Q3 588 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 PNLDC1Q8NA58 520 aaKnown RBP15.92■□□□□ 0.14
CLN3-260ENST00000637578 RPS4Y2Q8TD47 263 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 OR5M11Q96RB7 305 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 PDCD1LG2Q9BQ51 273 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 MS4A7Q9GZW8 240 aaPredicted RBP15.92■□□□□ 0.14
CLN3-260ENST00000637578 LSM2Q9Y333 95 aaKnown RBP15.92■□□□□ 0.14
CLN3-260ENST00000637578 TRBV2A0A0J9YWF9 115 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 A0A1B0GW55 424 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 TMEM89A2RUT3 159 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 OR5B21A6NL26 309 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DHRS7CA6NNS2 312 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 ZNF732B4DXR9 585 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4L2P0CJ85 424 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4L3P0CJ86 424 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4L4P0CJ87 422 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4L5P0CJ88 424 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4L6P0CJ89 424 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 DUX4L7P0CJ90 424 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 MAP2K4P45985 399 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 BPIFB3P59826 476 aa15.92■□□□□ 0.14
CLN3-260ENST00000637578 UBA52P62987 128 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms