RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR2T2Q6IF00 324 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 FAM96BQ9Y3D0 163 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 TMED3Q9Y3Q3 217 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 MTCH2Q9Y6C9 303 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 ROS1P08922 2347 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 HMSDA8MTL9 139 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 PRRG2O14669 202 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 ABCD4O14678 606 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 GALR2O43603 387 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-212ENST00000616140 RRASP10301 218 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 SUB1P53999 127 aaKnown RBP eCLIP12.46□□□□□ -0.411e-6■■□□□ 14.5
CPSF1-212ENST00000616140 NXPH1P58417 271 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 ACOT6Q3I5F7 207 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-212ENST00000616140 AARDQ4LEZ3 155 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 PABPC1L2AQ5JQF8 200 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 ACER2Q5QJU3 275 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 RHBDD2Q6NTF9 364 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 MRGPREQ86SM8 312 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 UBALD2Q8IYN6 164 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 OR13D1Q8NGV5 346 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 ADGRG7Q96K78 797 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 RASL12Q9NYN1 266 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 ERRFI1Q9UJM3 462 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-212ENST00000616140 MMP24Q9Y5R2 645 aa12.46□□□□□ -0.41
CPSF1-212ENST00000616140 H0Y8G0 127 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 OR5G3P0C626 314 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 KIR2DL1P43626 348 aaPredicted RBP12.46□□□□□ -0.42
CPSF1-212ENST00000616140 UBE2G1P62253 170 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 TLE1Q04724 770 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 NCR3LG1Q68D85 454 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF770Q6IQ21 691 aaPredicted RBP12.46□□□□□ -0.42
CPSF1-212ENST00000616140 UQCC3Q6UW78 93 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 SEZ6L2Q6UXD5 910 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 SPRED2Q7Z698 418 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 SFTPA2Q8IWL1 248 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 RYDENQ9NUL5 291 aaKnown RBP12.46□□□□□ -0.42
CPSF1-212ENST00000616140 LAMP3Q9UQV4 416 aa12.46□□□□□ -0.42
CPSF1-212ENST00000616140 MED19A0JLT2 244 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 CDC14BO60729 498 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 MBP02144 154 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 ZBTB25P24278 435 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 IL11RAQ14626 422 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 NTMQ9P121 344 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 ICAM5Q9UMF0 924 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 PDCD6O75340 191 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 CPN1P15169 458 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 DMWDQ09019 674 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF574Q6ZN55 896 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 DEFB123Q8N688 67 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 OR2I1PQ8NGU4 316 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 RFESDQ8TAC1 157 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 PINX1Q96BK5 328 aaKnown RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 TECTBQ96PL2 329 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 OPN4Q9UHM6 478 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 LTBP4Q8N2S1 1624 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 TMEM265A0A087WTH1 108 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 TRAF3IP2O43734 574 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 YIF1AO95070 293 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 SULT1A3P0DMM9 295 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 SULT1A4P0DMN0 295 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF250P15622 560 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 HOXD11P31277 338 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 RPS16P62249 146 aaKnown RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 RAC1P63000 192 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 CXorf67Q86X51 503 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 OR51I2Q9H344 312 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 SIRT4Q9Y6E7 314 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 ABCA1O95477 2261 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 COL4A5P29400 1685 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 OR2M5A3KFT3 312 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 GCM2O75603 506 aaPredicted RBP12.45□□□□□ -0.42
CPSF1-212ENST00000616140 OR1C1Q15619 314 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 SMIM21Q3B7S5 101 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 GGNBP1Q5YKI7 109 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 OR11H7Q8NGC8 314 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 OR8B12Q8NGG6 310 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 PPP1R3EQ9H7J1 279 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 ZFP64Q9NPA5 681 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 CES1P1Q9UKY3 287 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 WSB1Q9Y6I7 421 aa12.45□□□□□ -0.42
CPSF1-212ENST00000616140 AQP7P3A6NL99 342 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 CTDSPLO15194 276 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 GSTZ1O43708 216 aaPredicted RBP12.44□□□□□ -0.42
CPSF1-212ENST00000616140 NQO2P16083 231 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 NTF3P20783 257 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 UBE2G2P60604 165 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 OR10D3Q8NH80 312 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 CORO2AQ92828 525 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 FAM173AQ9BQD7 235 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 SOX7Q9BT81 388 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 MFRPQ9BY79 579 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 ESRP2Q9H6T0 727 aaKnown RBP12.44□□□□□ -0.42
CPSF1-212ENST00000616140 FBXL17Q9UF56 701 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 ZNF391Q9UJN7 358 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 TNFSF14O43557 240 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 GABRA1P14867 456 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 H3F3AP84243 136 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 PRSS54Q6PEW0 395 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 SMIM15Q7Z3B0 74 aa12.44□□□□□ -0.42
CPSF1-212ENST00000616140 FAM58AQ8N1B3 248 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms