RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 METTL21EPA6NDL7 271 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 FOXI3A8MTJ6 420 aaPredicted RBP12.15□□□□□ -0.47
USP39-220ENST00000613444 SFTPBP07988 381 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 MPZP25189 248 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 VHLLQ6RSH7 139 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 RTN4RL2Q86UN3 420 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 TMEM200AQ86VY9 491 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 DMRTC2Q8IXT2 367 aaPredicted RBP12.15□□□□□ -0.47
USP39-220ENST00000613444 OR51F2Q8NH61 342 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 S100A13Q99584 98 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 NUDT16L1Q9BRJ7 211 aaKnown RBP12.15□□□□□ -0.47
USP39-220ENST00000613444 THAP7Q9BT49 309 aaPredicted RBP12.15□□□□□ -0.47
USP39-220ENST00000613444 AUNIPQ9H7T9 357 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 NGBQ9NPG2 151 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 CA10Q9NS85 328 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 NDRG3Q9UGV2 375 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 FLNCQ14315 2725 aa12.15□□□□□ -0.47
USP39-220ENST00000613444 MEIOCA2RUB1 952 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 SIAH2O43255 324 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 VEGFCP49767 419 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 RPS23P62266 143 aaKnown RBP12.14□□□□□ -0.47
USP39-220ENST00000613444 DAZAP2Q15038 168 aaPredicted RBP12.14□□□□□ -0.47
USP39-220ENST00000613444 RAB12Q6IQ22 244 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 SAXO1Q8IYX7 474 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 ZNF808Q8N4W9 903 aaPredicted RBP12.14□□□□□ -0.47
USP39-220ENST00000613444 OR8S1Q8NH09 359 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 LRRC46Q96FV0 321 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 CYYR1Q96J86 154 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 Q96M66 194 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 MICU1Q9BPX6 476 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 RTL8AQ9BWD3 113 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 MRPL37Q9BZE1 423 aaKnown RBP12.14□□□□□ -0.47
USP39-220ENST00000613444 ELL3Q9HB65 397 aaPredicted RBP12.14□□□□□ -0.47
USP39-220ENST00000613444 MSL2Q9HCI7 577 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 MTCH1Q9NZJ7 389 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 DUSP13Q9UII6 198 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 NOP16Q9Y3C1 178 aaKnown RBP12.14□□□□□ -0.47
USP39-220ENST00000613444 ZNF462Q96JM2 2506 aa12.14□□□□□ -0.47
USP39-220ENST00000613444 SHISA9B4DS77 424 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 GABARAPH6UMI1 98 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 PLA2G10O15496 165 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 SOCS1O15524 211 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 SYNGR1O43759 233 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ZNF780AO75290 641 aaPredicted RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 CLDN14O95500 239 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 NPBWR2P48146 333 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 TMEM50BP56557 158 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 KLF3P57682 345 aaPredicted RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 RSU1Q15404 277 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 OR8G1Q15617 311 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 SLC22A25Q6T423 547 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ZNF573Q86YE8 665 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 OR10AD1Q8NGE0 317 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 OR52I2Q8NH67 350 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 GTF3AQ92664 365 aaKnown RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 MRPL24Q96A35 216 aaKnown RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 PHF21AQ96BD5 680 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 PLPPR2Q96GM1 343 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 SYT3Q9BQG1 590 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 SELENOIQ9C0D9 397 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 SLC22A4Q9H015 551 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ZNF442Q9H7R0 627 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ELF5Q9UKW6 265 aaPredicted RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 RBMX2Q9Y388 322 aaKnown RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 ABCA4P78363 2273 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 F8VVB4 439 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 F8VWA3 439 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 CHRM2P08172 466 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 CD3GP09693 182 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 SCN1BQ07699 218 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ZNF154Q13106 437 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 MAB21L1Q13394 359 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 GPR176Q14439 515 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 RGS21Q2M5E4 152 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ZNF260Q3ZCT1 412 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 PLAC9Q5JTB6 97 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ADAM5Q6NVV9 412 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 HAGHLQ6PII5 290 aaPredicted RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 OR10R2Q8NGX6 335 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 OR13G1Q8NGZ3 307 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 C15orf40Q8WUR7 153 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 AQP3Q92482 292 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 PKIBQ9C010 78 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 ESRP2Q9H6T0 727 aaKnown RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 ZMAT3Q9HA38 289 aaKnown RBP12.13□□□□□ -0.47
USP39-220ENST00000613444 PKDREJQ9NTG1 2253 aa12.13□□□□□ -0.47
USP39-220ENST00000613444 LRP5LA4QPB2 252 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 HTR3BO95264 441 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 GTF2F2P13984 249 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 MRPS10P82664 201 aaKnown RBP12.12□□□□□ -0.47
USP39-220ENST00000613444 IL24Q13007 206 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 RNASE12Q5GAN4 147 aaKnown RBP12.12□□□□□ -0.47
USP39-220ENST00000613444 TRIQKQ629K1 86 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 ELP2Q6IA86 826 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 CHPT1Q8WUD6 406 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 SLAMF9Q96A28 289 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 HS3ST6Q96QI5 342 aa12.12□□□□□ -0.47
USP39-220ENST00000613444 URM1Q9BTM9 101 aaKnown RBP12.12□□□□□ -0.47
USP39-220ENST00000613444 KCNK7Q9Y2U2 307 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms