RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 C17orf100A8MU93 164 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 TRAPPC2LH3BP13 241 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 HS3ST1O14792 307 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 ANGPTL7O43827 346 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 CRTAPO75718 401 aaPredicted RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 SCGNO76038 276 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 GRPP07492 148 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 ADH4P08319 380 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 VSIG8P0DPA2 414 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 ELK1P19419 428 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 MPZP25189 248 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 COL8A1P27658 744 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 TNFAIP6P98066 277 aaPredicted RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 HIST2H2BCQ6DN03 193 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 BAIAP2L2Q6UXY1 529 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 ASCL4Q6XD76 172 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 CCDC190Q86UF4 302 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 CDH24Q86UP0 819 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 CALHM1Q8IU99 346 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 LILRB1Q8NHL6 650 aaPredicted RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 GTF3AQ92664 365 aaKnown RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 S100A16Q96FQ6 103 aaKnown RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 URM1Q9BTM9 101 aaKnown RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 TMEM59Q9BXS4 323 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 WDR12Q9GZL7 423 aaKnown RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 ABCG5Q9H222 651 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 RHOFQ9HBH0 211 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 IL36GQ9NZH8 169 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 RABL2AQ9UBK7 228 aaPredicted RBP13.13□□□□□ -0.31
UPF1-206ENST00000598471 EXTL2Q9UBQ6 330 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 RABL2BQ9UNT1 228 aa13.13□□□□□ -0.31
UPF1-206ENST00000598471 GCN1Q92616 2671 aaKnown RBP13.12□□□□□ -0.31
UPF1-206ENST00000598471 TMEM14DPA8MWL7 114 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 CLDN25C9JDP6 229 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 LDLRAD4O15165 306 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 HTR3BO95264 441 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 MPIG6BO95866 241 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 IGHV1-46P01743 117 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 EIF4EP06730 217 aaKnown RBP13.12□□□□□ -0.31
UPF1-206ENST00000598471 BMP4P12644 408 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 GTF2F2P13984 249 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 COX6B1P14854 86 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 SERPINA2P20848 420 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 ETV6P41212 452 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 ZNF45Q02386 682 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 ZNF154Q13106 437 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 ZNF846Q147U1 533 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 PCGF3Q3KNV8 242 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 FAM209AQ5JX71 171 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 AGAP6Q5VW22 663 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 CNIH2Q6PI25 160 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 METAP1DQ6UB28 335 aaPredicted RBP13.12□□□□□ -0.31
UPF1-206ENST00000598471 C1QL2Q7Z5L3 287 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 WDR86Q86TI4 376 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 Q8IYB0 196 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 SCCPDHQ8NBX0 429 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 AQP3Q92482 292 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 FAM46BQ96A09 425 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 SLAMF9Q96A28 289 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 SLC25A38Q96DW6 304 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 MRPS24Q96EL2 167 aaKnown RBP13.12□□□□□ -0.31
UPF1-206ENST00000598471 MEGF10Q96KG7 1140 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 C1orf147Q96MC9 270 aaPredicted RBP13.12□□□□□ -0.31
UPF1-206ENST00000598471 OR2V2Q96R30 315 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 EGLN1Q9GZT9 426 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 ATG5Q9H1Y0 275 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 KCNK15Q9H427 330 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 FN3KRPQ9HA64 309 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 AKIP1Q9NQ31 210 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 DIABLOQ9NR28 239 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 IL19Q9UHD0 177 aa13.12□□□□□ -0.31
UPF1-206ENST00000598471 FABP12A6NFH5 140 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 TPD52L2O43399 206 aaKnown RBP13.11□□□□□ -0.31
UPF1-206ENST00000598471 CDC14BO60729 498 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 CD55P08174 381 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 MGMTP16455 207 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 TNFRSF1AP19438 455 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 QRFPP83859 136 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 MAB21L1Q13394 359 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 UNC119Q13432 240 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 TESK1Q15569 626 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 OR10K2Q6IF99 312 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 RAB12Q6IQ22 244 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 FAM131AQ6UXB0 335 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 CMTM4Q8IZR5 234 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 ERGIC1Q969X5 290 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 TLNRD1Q9H1K6 362 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 CBLN4Q9NTU7 201 aa13.11□□□□□ -0.31
UPF1-206ENST00000598471 DOPEY2Q9Y3R5 2298 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 A0A0A6YYH2 397 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 IGKV1-12A0A0C4DH73 117 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 hCG_1807616A0A1W2PRN6 198 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 A6NJ64 397 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 CDIPTO14735 213 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 SYNGR1O43759 233 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 PTBP3O95758 552 aaKnown RBP13.1□□□□□ -0.31
UPF1-206ENST00000598471 IGKV1D-12P01611 117 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 CPT2P23786 658 aa13.1□□□□□ -0.31
UPF1-206ENST00000598471 PTBP1P26599 531 aaKnown RBP eCLIP13.1□□□□□ -0.31
UPF1-206ENST00000598471 NR4A2P43354 598 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms