RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PLAUP00749 431 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 PLATP00750 562 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 ACAA1P09110 424 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-209ENST00000597423 VSIG8P0DPA2 414 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 LOXP28300 417 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-209ENST00000597423 FAM209AQ5JX71 171 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 AGAP6Q5VW22 663 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 CNIH2Q6PI25 160 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 FAM131AQ6UXB0 335 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 CMTM4Q8IZR5 234 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 MUC15Q8N387 334 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 OR10AD1Q8NGE0 317 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 DVL3Q92997 716 aaPredicted RBP12.97□□□□□ -0.33
TRIM28-209ENST00000597423 FBXW5Q969U6 566 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 ERGIC1Q969X5 290 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 FAM46BQ96A09 425 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 HS3ST6Q96QI5 342 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 MYEF2Q9P2K5 600 aaKnown RBP12.97□□□□□ -0.33
TRIM28-209ENST00000597423 EXTL2Q9UBQ6 330 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 IL19Q9UHD0 177 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 FAM208BQ5VWN6 2430 aa12.97□□□□□ -0.33
TRIM28-209ENST00000597423 ZSCAN5BA6NJL1 495 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 A6NLC8 198 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 C17orf100A8MU93 164 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 TMEM14DPA8MWL7 114 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 LDLRAD4O15165 306 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 SPRY1O43609 319 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-209ENST00000597423 CDC14BO60729 498 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 MPIG6BO95866 241 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 ADH4P08319 380 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 TNFRSF1AP19438 455 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 MPZP25189 248 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 NR4A2P43354 598 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 PITPNBP48739 271 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 QRFPP83859 136 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 TNFAIP6P98066 277 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-209ENST00000597423 TMEM255AQ5JRV8 349 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 C1QL2Q7Z5L3 287 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 CALHM1Q8IU99 346 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 SCCPDHQ8NBX0 429 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 ACBD4Q8NC06 268 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 LILRB1Q8NHL6 650 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-209ENST00000597423 NEUROG1Q92886 237 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 NKX3-1Q99801 234 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-209ENST00000597423 TMEM59Q9BXS4 323 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 FN3KRPQ9HA64 309 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 DECR2Q9NUI1 292 aa12.96□□□□□ -0.33
TRIM28-209ENST00000597423 HS3ST1O14792 307 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 TPD52L2O43399 206 aaKnown RBP12.95□□□□□ -0.34
TRIM28-209ENST00000597423 XRCC3O43542 346 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 ANGPTL7O43827 346 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 PTBP3O95758 552 aaKnown RBP12.95□□□□□ -0.34
TRIM28-209ENST00000597423 IGHV1-46P01743 117 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 EIF4EP06730 217 aaKnown RBP12.95□□□□□ -0.34
TRIM28-209ENST00000597423 COX6B1P14854 86 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 SERPINA2P20848 420 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 ZNF154Q13106 437 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 MAB21L1Q13394 359 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 ARL6IP1Q15041 203 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 TMEM69Q5SWH9 247 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 ELP2Q6IA86 826 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 PYHIN1Q6K0P9 492 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 CRIP3Q6Q6R5 217 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 FIP1L1Q6UN15 594 aaKnown RBP12.95□□□□□ -0.34
TRIM28-209ENST00000597423 RNF144BQ7Z419 303 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 OSR2Q8N2R0 312 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 OR56B1Q8NGI3 324 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 OR51T1Q8NGJ9 327 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 AQP3Q92482 292 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 MEGF10Q96KG7 1140 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 NUDT16L1Q9BRJ7 211 aaKnown RBP12.95□□□□□ -0.34
TRIM28-209ENST00000597423 FGF23Q9GZV9 251 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-209ENST00000597423 TLNRD1Q9H1K6 362 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 AKIP1Q9NQ31 210 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 HCFC1P51610 2035 aa12.95□□□□□ -0.34
TRIM28-209ENST00000597423 PRR14LQ5THK1 2151 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CLEC18AA5D8T8 446 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CDIPTO14735 213 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 AKR7A2O43488 359 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CTAG2O75638 210 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CD55P08174 381 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 MGMTP16455 207 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CPT2P23786 658 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CD40LGP29965 261 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 PPP5CP53041 499 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 SRSF1Q07955 248 aaKnown RBP eCLIP12.94□□□□□ -0.34
TRIM28-209ENST00000597423 IL18Q14116 193 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 TESK1Q15569 626 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 PYDC2Q56P42 97 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 SP5Q6BEB4 398 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-209ENST00000597423 OR10K2Q6IF99 312 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CLEC18BQ6UXF7 455 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 GDPD1Q8N9F7 314 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 CLEC18CQ8NCF0 446 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 Q8NFD4 153 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 OR4M1Q8NGD0 313 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 OR11L1Q8NGX0 322 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 OR10Z1Q8NGY1 313 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 HPS1Q92902 700 aa12.94□□□□□ -0.34
TRIM28-209ENST00000597423 SLAMF9Q96A28 289 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms