RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 LAMP5Q9UJQ1 280 aa11.32□□□□□ -0.6
VMP1-209ENST00000588915 TCF19Q9Y242 345 aa11.32□□□□□ -0.6
VMP1-209ENST00000588915 DNAH3Q8TD57 4116 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 TMEM269A0A1B0GVZ9 245 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 C17orf98A8MV24 154 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 E2F6O75461 281 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 RBP4P02753 201 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 PRB2P02812 416 aaPredicted RBP11.31□□□□□ -0.6
VMP1-209ENST00000588915 PGA5P0DJD9 388 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 DYNLT3P51808 116 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 BMXP51813 675 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 TRIM25Q14258 630 aaKnown RBP11.31□□□□□ -0.6
VMP1-209ENST00000588915 GINS1Q14691 196 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 CNN3Q15417 329 aaKnown RBP11.31□□□□□ -0.6
VMP1-209ENST00000588915 NSUN5P1Q3KNT7 163 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 MOB3CQ70IA8 216 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 DHFR2Q86XF0 187 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 WFDC9Q8NEX5 89 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 RPS4Y2Q8TD47 263 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 R3HDM4Q96D70 268 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 NKX3-1Q99801 234 aaPredicted RBP11.31□□□□□ -0.6
VMP1-209ENST00000588915 MROQ9BYG7 248 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 YIPF3Q9GZM5 350 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 PRSS22Q9GZN4 317 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 WNT10AQ9GZT5 417 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 ABCB10Q9NRK6 738 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 FAM206AQ9NX38 181 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 POLDIP2Q9Y2S7 368 aa11.31□□□□□ -0.6
VMP1-209ENST00000588915 A6NDX4 124 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 J3QT63 122 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 DCTN3O75935 186 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 NRASP01111 189 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 TK1P04183 234 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 RAP2AP10114 183 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 CD28P10747 220 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 CDK5Q00535 292 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 ROM1Q03395 351 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 ZNF684Q5T5D7 378 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 PLCXD3Q63HM9 321 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 CPOQ8IVL8 374 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 OR11H6Q8NGC7 330 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 OR13D1Q8NGV5 346 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 SGCDQ92629 289 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 TEX12Q9BXU0 123 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 PBOV1Q9GZY1 135 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 MMP28Q9H239 520 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 C1orf21Q9H246 121 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 GPR84Q9NQS5 396 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 NUFIP1Q9UHK0 495 aaKnown RBP11.3□□□□□ -0.6
VMP1-209ENST00000588915 KLHDC2Q9Y2U9 406 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 TMEM14AQ9Y6G1 99 aa11.3□□□□□ -0.6
VMP1-209ENST00000588915 ODF3BA8MYP8 253 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 H3BUI4 141 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 DLGAP1O14490 977 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 PEX14O75381 377 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 DHRS3O75911 302 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 NXPH2O95156 264 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 ALDOBP05062 364 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 OSMP13725 252 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 CCL3L1P16619 93 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 HOXB6P17509 224 aaKnown RBP11.29□□□□□ -0.6
VMP1-209ENST00000588915 SLC2A5P22732 501 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 COX7A1P24310 79 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 PAX6P26367 422 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 HAAOP46952 286 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 DLX6P56179 175 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 ZNF273Q14593 569 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 CLVS2Q5SYC1 327 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 ZNF626Q68DY1 528 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 TMEM42Q69YG0 159 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 CCBE1Q6UXH8 406 aaPredicted RBP11.29□□□□□ -0.6
VMP1-209ENST00000588915 LHFPL4Q7Z7J7 247 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 ZNF679Q8IYX0 411 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 OR51E1Q8TCB6 317 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 ASB17Q8WXJ9 295 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 OR8B4Q96RC9 309 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 CITED2Q99967 270 aaPredicted RBP11.29□□□□□ -0.6
VMP1-209ENST00000588915 NRIP2Q9BQI9 281 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 FAM107BQ9H098 131 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 ZNF556Q9HAH1 456 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 HES4Q9HCC6 221 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 AURKAIP1Q9NWT8 199 aaPredicted RBP11.29□□□□□ -0.6
VMP1-209ENST00000588915 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.29□□□□□ -0.6
VMP1-209ENST00000588915 PIGLQ9Y2B2 252 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 ARL2BPQ9Y2Y0 163 aa11.29□□□□□ -0.6
VMP1-209ENST00000588915 DHRS7CA6NNS2 312 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 ADARB2-AS1A8MUL3 147 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 K7N7A8 449 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 SYNGR1O43759 233 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 CST1P01037 141 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 ZNF728P0DKX0 622 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 MPZP25189 248 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 RIDAP52758 137 aaKnown RBP11.28□□□□□ -0.6
VMP1-209ENST00000588915 RPS7P62081 194 aaKnown RBP11.28□□□□□ -0.6
VMP1-209ENST00000588915 MS4A2Q01362 244 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 ZNF829Q3KNS6 432 aaPredicted RBP11.28□□□□□ -0.6
VMP1-209ENST00000588915 PIGWQ7Z7B1 504 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 COMMD2Q86X83 199 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 LYG1Q8N1E2 194 aa11.28□□□□□ -0.6
VMP1-209ENST00000588915 DYNAPQ8N1N2 210 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms