RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TM2D1Q9BX74 207 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 BCL2L14Q9BZR8 327 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 ZMAT3Q9HA38 289 aaKnown RBP9.01□□□□□ -0.97
SS18-217ENST00000580958 SCPEP1Q9HB40 452 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 MOV10Q9HCE1 1003 aaKnown RBP9.01□□□□□ -0.97
SS18-217ENST00000580958 KLK11Q9UBX7 282 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 MTFP1Q9UDX5 166 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 OSGIN2Q9Y236 505 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 MPC1Q9Y5U8 109 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 NBASA2RRP1 2371 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 ICE1Q9Y2F5 2266 aa9.01□□□□□ -0.97
SS18-217ENST00000580958 FUOMA2VDF0 154 aa9□□□□□ -0.97
SS18-217ENST00000580958 CENPXA8MT69 81 aa9□□□□□ -0.97
SS18-217ENST00000580958 IQCF6A8MYZ5 107 aa9□□□□□ -0.97
SS18-217ENST00000580958 C16orf97H3BN30 126 aa9□□□□□ -0.97
SS18-217ENST00000580958 ZZEF1O43149 2961 aa9□□□□□ -0.97
SS18-217ENST00000580958 RBBP9O75884 186 aa9□□□□□ -0.97
SS18-217ENST00000580958 FCER2P06734 321 aa9□□□□□ -0.97
SS18-217ENST00000580958 GNB3P16520 340 aa9□□□□□ -0.97
SS18-217ENST00000580958 TMEM50BP56557 158 aa9□□□□□ -0.97
SS18-217ENST00000580958 PSG7Q13046 419 aa9□□□□□ -0.97
SS18-217ENST00000580958 DYRK1AQ13627 763 aa9□□□□□ -0.97
SS18-217ENST00000580958 FAM189A2Q15884 450 aa9□□□□□ -0.97
SS18-217ENST00000580958 PCGF3Q3KNV8 242 aa9□□□□□ -0.97
SS18-217ENST00000580958 LINC01559Q495D7 138 aa9□□□□□ -0.97
SS18-217ENST00000580958 OLFML2AQ68BL7 652 aa9□□□□□ -0.97
SS18-217ENST00000580958 SEZ6L2Q6UXD5 910 aa9□□□□□ -0.97
SS18-217ENST00000580958 UNQ6126/PRO20091Q6UXV3 157 aa9□□□□□ -0.97
SS18-217ENST00000580958 C22orf34Q6ZV56 151 aa9□□□□□ -0.97
SS18-217ENST00000580958 FJX1Q86VR8 437 aa9□□□□□ -0.97
SS18-217ENST00000580958 FAM89BQ8N5H3 189 aa9□□□□□ -0.97
SS18-217ENST00000580958 ZNF611Q8N823 705 aa9□□□□□ -0.97
SS18-217ENST00000580958 ZSCAN4Q8NAM6 433 aaPredicted RBP9□□□□□ -0.97
SS18-217ENST00000580958 OR5A2Q8NGI9 324 aa9□□□□□ -0.97
SS18-217ENST00000580958 KLF14Q8TD94 323 aaPredicted RBP9□□□□□ -0.97
SS18-217ENST00000580958 SEH1LQ96EE3 360 aa9□□□□□ -0.97
SS18-217ENST00000580958 ARHGAP5-AS1Q96IT6 56 aa9□□□□□ -0.97
SS18-217ENST00000580958 CYYR1Q96J86 154 aa9□□□□□ -0.97
SS18-217ENST00000580958 HRASLSQ9HDD0 168 aa9□□□□□ -0.97
SS18-217ENST00000580958 IL36GQ9NZH8 169 aa9□□□□□ -0.97
SS18-217ENST00000580958 NLKQ9UBE8 527 aa9□□□□□ -0.97
SS18-217ENST00000580958 FZR1Q9UM11 496 aa9□□□□□ -0.97
SS18-217ENST00000580958 ITPR1Q14643 2758 aa9□□□□□ -0.97
SS18-217ENST00000580958 ACACBO00763 2458 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 OR5B21A6NL26 309 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 FOXI3A8MTJ6 420 aaPredicted RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 ERVH48-1M5A8F1 160 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 CCL21O00585 134 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 PFDN1O60925 122 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 ZNF780AO75290 641 aaPredicted RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 CSTBP04080 98 aaKnown RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 LPLP06858 475 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 GSTP1P09211 210 aaKnown RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 HIST1H1DP16402 221 aaKnown RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 BCL3P20749 454 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 TUBG1P23258 451 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 CPT2P23786 658 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 GABRR1P24046 479 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 BLVRBP30043 206 aaPredicted RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 HAAOP46952 286 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 AP3S2P59780 193 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 SSBP1Q04837 148 aaKnown RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 SNTB2Q13425 540 aaKnown RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 ZNF718Q3SXZ3 478 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 PLA1AQ53H76 456 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 PLAC9Q5JTB6 97 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 C1QTNF12Q5T7M4 302 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 RSBN1Q5VWQ0 802 aaPredicted RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 SLC25A26Q70HW3 274 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 TRAPPC6BQ86SZ2 158 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 WFDC8Q8IUA0 241 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 CADM3Q8N126 398 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 BATF2Q8N1L9 274 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 DUSP18Q8NEJ0 188 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 OR51F2Q8NH61 342 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 NUDCD2Q8WVJ2 157 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 SLAMF9Q96A28 289 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 RAB3CQ96E17 227 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 Q96M66 194 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 MICU1Q9BPX6 476 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 ADAT1Q9BUB4 502 aaKnown RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 PECRQ9BY49 303 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 DPAGT1Q9H3H5 408 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 TUBG2Q9NRH3 451 aa8.99□□□□□ -0.97
SS18-217ENST00000580958 PURGQ9UJV8 347 aaKnown RBP8.99□□□□□ -0.97
SS18-217ENST00000580958 HCFC1P51610 2035 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 NAP1L6A6NFF2 107 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 MFNGO00587 321 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 SIAH2O43255 324 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 SYNGR1O43759 233 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 TIMM8AO60220 97 aaPredicted RBP8.98□□□□□ -0.97
SS18-217ENST00000580958 SSX5O60225 188 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 CRYAAP02489 173 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 SFTPBP07988 381 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 MELTFP08582 738 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 CSF1P09603 554 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 GTF2F2P13984 249 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 KITLGP21583 273 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 GIFP27352 417 aa8.98□□□□□ -0.97
SS18-217ENST00000580958 SLC6A1P30531 599 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms