RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ALX1Q15699 326 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 KYAT1Q16773 422 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CT45A1Q5HYN5 189 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 ZNF506Q5JVG8 444 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 LEMD1Q68G75 181 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 FAM151BQ6UXP7 276 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 AHSA2Q719I0 299 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 SSX6Q7RTT6 188 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CRLF3Q8IUI8 442 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CBLN2Q8IUK8 224 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CDKL3Q8IVW4 592 aaPredicted RBP4.46□□□□□ -1.7
VPS53-219ENST00000576019 ZFP41Q8N8Y5 198 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 Q8NBF4 154 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 OR6T1Q8NGN1 323 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 OR6K6Q8NGW6 343 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 OR6K2Q8NGY2 324 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 OR51A7Q8NH64 312 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CT45A3Q8NHU0 189 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 BMFQ96LC9 184 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 MCCC1Q96RQ3 725 aaPredicted RBP4.46□□□□□ -1.7
VPS53-219ENST00000576019 MICU1Q9BPX6 476 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 ZNF251Q9BRH9 671 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 TIMM29Q9BSF4 260 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 COPS4Q9BT78 406 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 API5Q9BZZ5 524 aaKnown RBP4.46□□□□□ -1.7
VPS53-219ENST00000576019 JPT2Q9H910 190 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 FGF22Q9HCT0 170 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 FADS3Q9Y5Q0 445 aa4.46□□□□□ -1.7
VPS53-219ENST00000576019 CR1P17927 2039 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 A0A0A6YYD5 115 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 A0A1B0GVI7 797 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 NKX2-6A6NCS4 301 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 SEC14L6B5MCN3 397 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 BMPR1BO00238 502 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 NME4O00746 187 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 NUPL2O15504 423 aaKnown RBP4.45□□□□□ -1.7
VPS53-219ENST00000576019 RAD51CO43502 376 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 IDH3BO43837 385 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 ZFAND5O76080 213 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 GCGP01275 180 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 MELTFP08582 738 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 CALM1P0DP23 149 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 CALM2P0DP24 149 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 CALM3P0DP25 149 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 IGLL1P15814 213 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 HLA-GP17693 338 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 S100A5P33763 92 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 ARL2P36404 184 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 GPR6P46095 362 aaPredicted RBP4.45□□□□□ -1.7
VPS53-219ENST00000576019 IFFO1Q0D2I5 559 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 TPBGQ13641 420 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 GNA13Q14344 377 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 CAPRIN1Q14444 709 aaKnown RBP4.45□□□□□ -1.7
VPS53-219ENST00000576019 EXOC3L4Q17RC7 722 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 NHLRC3Q5JS37 347 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 TPTE2P1Q5T6R2 138 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 C1QL2Q7Z5L3 287 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 PPP1R27Q86WC6 154 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 HORMAD1Q86X24 394 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 C12orf56Q8IXR9 622 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 C6orf223Q8N319 242 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 OR10R2Q8NGX6 335 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 CT55Q8WUE5 264 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 ARPC1AQ92747 370 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 FRAT1Q92837 279 aaPredicted RBP4.45□□□□□ -1.7
VPS53-219ENST00000576019 ZNF501Q96CX3 271 aaPredicted RBP4.45□□□□□ -1.7
VPS53-219ENST00000576019 ATF6BQ99941 703 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 APOL2Q9BQE5 337 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 CHCHD5Q9BSY4 110 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 SPZ1Q9BXG8 430 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 ULBP3Q9BZM4 244 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 IMP3Q9NV31 184 aaKnown RBP4.45□□□□□ -1.7
VPS53-219ENST00000576019 CALYQ9NYX4 217 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 MAT2BQ9NZL9 334 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 Q9UF83 564 aa4.45□□□□□ -1.7
VPS53-219ENST00000576019 A0A0G2JLM5 398 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 A0A1B0GU03 582 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 A8MX80 341 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 A8MXK9 166 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 K7N7A8 449 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 ALOX12BO75342 701 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 TRAPPC6AO75865 159 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 HOXC4P09017 264 aaPredicted RBP4.44□□□□□ -1.7
VPS53-219ENST00000576019 TRIM49P0CI25 452 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 TRIM49CP0CI26 452 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 SLC35E2P0CK97 266 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 AQP1P29972 269 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 CA5AP35218 305 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 PSMD8P48556 350 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 DNASE1L1P49184 302 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 UGT2B15P54855 530 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 DLX5P56178 289 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 SELENOTP62341 195 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 RPL31P62899 125 aaKnown RBP4.44□□□□□ -1.7
VPS53-219ENST00000576019 OR4D1Q15615 310 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 ZBTB6Q15916 424 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 ACTL10Q5JWF8 245 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 PRSS41Q7RTY9 318 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 LRRC6Q86X45 466 aa4.44□□□□□ -1.7
VPS53-219ENST00000576019 FUNDC1Q8IVP5 155 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms