RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NECAP1Q8NC96 275 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 SLC46A1Q96NT5 459 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 ATP6V0BQ99437 205 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 NTNG1Q9Y2I2 539 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 SPAG17Q6Q759 2223 aa9.6□□□□□ -0.87
CLK3-226ENST00000569406 FRYLO94915 3013 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 A0A087WWC5 75 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 TRAV1-2A0A0B4J238 106 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 A0A1W2PS29 197 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 PPP2CBP62714 309 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 PPP2CAP67775 309 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 COX15Q7KZN9 410 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 ZNF679Q8IYX0 411 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 GPX8Q8TED1 209 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 FAM222BQ8WU58 562 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 CITED1Q99966 193 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 C1orf198Q9H425 327 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 NOX4Q9NPH5 578 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 DEC1Q9P2X7 70 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 LAMP3Q9UQV4 416 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 RNF115Q9Y4L5 304 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 OR1A2Q9Y585 309 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 LRP4O75096 1905 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 ODAMA1E959 279 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 LATO43561 262 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 CA3P07451 260 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 RAB40ALP0C0E4 278 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 EDNRAP25101 427 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 PPP1CCP36873 323 aaKnown RBP9.59□□□□□ -0.87
CLK3-226ENST00000569406 CEBPDP49716 269 aaPredicted RBP9.59□□□□□ -0.87
CLK3-226ENST00000569406 DUSP2Q05923 314 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 GNMTQ14749 295 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 TMEM205Q6UW68 189 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 DND1Q8IYX4 353 aaKnown RBP9.59□□□□□ -0.87
CLK3-226ENST00000569406 OR6N2Q8NGY6 317 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 RAB40AQ8WXH6 277 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 CTHRC1Q96CG8 243 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 BET1LQ9NYM9 111 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 MSRAQ9UJ68 235 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 GJE1A6NN92 205 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 CLDN34H7C241 214 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 SERPINA7P05543 415 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 JMJD7P0C870 316 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 PEBP1P30086 187 aaKnown RBP9.59□□□□□ -0.87
CLK3-226ENST00000569406 HTR1FP30939 366 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 GNB2P62879 340 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 FUT5Q11128 374 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 ZNF260Q3ZCT1 412 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 TP53I3Q53FA7 332 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 TMEM177Q53S58 311 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 RD3Q7Z3Z2 195 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 SHISA5Q8N114 240 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 C15orf40Q8WUR7 153 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 FGF11Q92914 225 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 NEURL3Q96EH8 262 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 PDCD1LG2Q9BQ51 273 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 RPP25Q9BUL9 199 aaKnown RBP9.59□□□□□ -0.87
CLK3-226ENST00000569406 CST11Q9H112 138 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 SELENOKQ9Y6D0 94 aa9.59□□□□□ -0.87
CLK3-226ENST00000569406 HMGN4O00479 90 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 MPZL1O95297 269 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 DUS4LO95620 317 aaKnown RBP9.58□□□□□ -0.88
CLK3-226ENST00000569406 ADAM8P78325 824 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 OR51L1Q8NGJ5 315 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 FAM213BQ8TBF2 198 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 KCNE4Q8WWG9 221 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 NRIP3Q9NQ35 241 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 SERTAD3Q9UJW9 196 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 PPP1R3CQ9UQK1 317 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 FUT9Q9Y231 359 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 A0A0A6YYD5 115 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 CDHR4A6H8M9 788 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 CTAG2O75638 210 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 ZNF28P17035 718 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 EN2P19622 333 aaPredicted RBP9.58□□□□□ -0.88
CLK3-226ENST00000569406 SRMP19623 302 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 MAP1BP46821 2468 aaKnown RBP9.58□□□□□ -0.88
CLK3-226ENST00000569406 SLC6A9P48067 706 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 RUNX2Q13950 521 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 C9orf50Q5SZB4 431 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 WBP2NLQ6ICG8 309 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 LYG2Q86SG7 212 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 OR2A1Q8NGT9 310 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 CACNG8Q8WXS5 425 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 SFRP2Q96HF1 295 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 SLC41A2Q96JW4 573 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 PGLYRP3Q96LB9 341 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 SCRT1Q9BWW7 348 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 TMEM9BQ9NQ34 198 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 HINT3Q9NQE9 182 aaKnown RBP9.58□□□□□ -0.88
CLK3-226ENST00000569406 P2RX2Q9UBL9 471 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 V9GY05 133 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 TLCD2A6NGC4 264 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 B4DGG1 531 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 DRD1P21728 446 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 S100GP29377 79 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 PRSS3P35030 304 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 SLC25A1P53007 311 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 CSNK1G2P78368 415 aa9.58□□□□□ -0.88
CLK3-226ENST00000569406 FIGLAQ6QHK4 219 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms