RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 BEAN1Q3B7T3 259 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 ZBTB37Q5TC79 503 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 PLCXD3Q63HM9 321 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 HIST2H2BDQ6DRA6 164 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 FAHD1Q6P587 224 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 ACP7Q6ZNF0 438 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 MOB3CQ70IA8 216 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 COMMD2Q86X83 199 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 POC1AQ8NBT0 407 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 OR51E1Q8TCB6 317 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 CFHR4Q92496 578 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 MROQ9BYG7 248 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 PBOV1Q9GZY1 135 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 SLC25A19Q9HC21 320 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 RAB18Q9NP72 206 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 GPR84Q9NQS5 396 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 FOXJ3Q9UPW0 622 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 AP4S1Q9Y587 144 aa12.13□□□□□ -0.47
CLN3-236ENST00000568558 MEGF11A6BM72 1044 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 RFPL4AA6NLU0 287 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 PRR32B1ATL7 298 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 RFPL4AL1F8VTS6 287 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 G3V4G9 280 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 EBAG9O00559 213 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 ANXA8P13928 327 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 KPNB1Q14974 876 aaKnown RBP12.12□□□□□ -0.47
CLN3-236ENST00000568558 TMEM236Q5W0B7 351 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 C11orf42Q8N5U0 333 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 CD177Q8N6Q3 437 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 KLHDC1Q8N7A1 406 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 C11orf44Q8N8P7 122 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 OR2T6Q8NHC8 308 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 PYDC1Q8WXC3 89 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 NRBF2Q96F24 287 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 ZNF488Q96MN9 340 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 OR8B4Q96RC9 309 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 TEAD3Q99594 435 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 HEXA-AS1Q9H8Q6 139 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 ZNF556Q9HAH1 456 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.12□□□□□ -0.47
CLN3-236ENST00000568558 NUFIP1Q9UHK0 495 aaKnown RBP12.12□□□□□ -0.47
CLN3-236ENST00000568558 ENPP5Q9UJA9 477 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 PIGLQ9Y2B2 252 aa12.12□□□□□ -0.47
CLN3-236ENST00000568558 A0A1W2PPH5 198 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 CCDC182A6NF36 153 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 SLC1A7O00341 560 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 SYNGR1O43759 233 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 CHST1O43916 411 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 MITFO75030 526 aaPredicted RBP12.11□□□□□ -0.47
CLN3-236ENST00000568558 ZNF254O75437 659 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 DHRS3O75911 302 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 OPN1MWP04001 364 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 MRPL3P09001 348 aaKnown RBP12.11□□□□□ -0.47
CLN3-236ENST00000568558 PGA5P0DJD9 388 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 OPN1MW2P0DN77 364 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 OPN1MW3P0DN78 364 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 FASP25445 335 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 CEBPDP49716 269 aaPredicted RBP12.11□□□□□ -0.47
CLN3-236ENST00000568558 BMXP51813 675 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 RPL31P62899 125 aaKnown RBP12.11□□□□□ -0.47
CLN3-236ENST00000568558 ROM1Q03395 351 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 ZNF829Q3KNS6 432 aaPredicted RBP12.11□□□□□ -0.47
CLN3-236ENST00000568558 KPRPQ5T749 579 aaPredicted RBP12.11□□□□□ -0.47
CLN3-236ENST00000568558 SAMD5Q5TGI4 173 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 TMEM200BQ69YZ2 307 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 LIAT1Q6ZQX7 453 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 ZNF679Q8IYX0 411 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 ZNF561Q8N587 486 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 PPP1R14AQ96A00 147 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 TTTY10Q9BZA0 68 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 USE1Q9NZ43 259 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 COPS3Q9UNS2 423 aa12.11□□□□□ -0.47
CLN3-236ENST00000568558 H3BNX3 289 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 J3QT63 122 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 NOS1APO75052 506 aaPredicted RBP12.1□□□□□ -0.47
CLN3-236ENST00000568558 NRASP01111 189 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 TTRP02766 147 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 CCL3L1P16619 93 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 COX7A1P24310 79 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 PRDX2P32119 198 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 HAAOP46952 286 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 RIDAP52758 137 aaKnown RBP12.1□□□□□ -0.47
CLN3-236ENST00000568558 ACTR3P61158 418 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 MFGE8Q08431 387 aaPredicted RBP12.1□□□□□ -0.47
CLN3-236ENST00000568558 ZNF273Q14593 569 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 SNAPC1Q16533 368 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 ZNF684Q5T5D7 378 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 LCN1P1Q5VSP4 162 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 OR2T27Q8NH04 317 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 PIFOQ8TCI5 191 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 TEX12Q9BXU0 123 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 NPFFR1Q9GZQ6 430 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 PAPOLBQ9NRJ5 636 aaKnown RBP12.1□□□□□ -0.47
CLN3-236ENST00000568558 TVP23BQ9NYZ1 205 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 TMEM14AQ9Y6G1 99 aa12.1□□□□□ -0.47
CLN3-236ENST00000568558 hCG_1809904A0A1W2PP81 198 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 A0A1W2PPE2 198 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 A0A1W2PR64 198 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 A0A1W2PRV1 198 aa12.09□□□□□ -0.47
CLN3-236ENST00000568558 G3V2T6 193 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms