RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	SNRNP70	P08621	437 aa	Known RBP	12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	PGA5	P0DJD9	388 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	GNG3	P63215	75 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	CBX1	P83916	185 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	IL18R1	Q13478	541 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	SMIM21	Q3B7S5	101 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	CEP78	Q5JTW2	689 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	C9orf66	Q5T8R8	295 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	HAGHL	Q6PII5	290 aa	Predicted RBP	12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	PRSS45	Q7RTY3	260 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	TLCD1	Q96CP7	247 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	CDRT15	Q96T59	188 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	ZFP57	Q9NU63	452 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	GID8	Q9NWU2	228 aa		12.83	□□□□□ -0.36
CLK3-223	ENST00000568488	BRS3	P32247	399 aa		12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	EDDM3B	P56851	147 aa		12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	KRT77	Q7Z794	578 aa		12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	BATF2	Q8N1L9	274 aa		12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	ZNF676	Q8N7Q3	588 aa		12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	AQP3	Q92482	292 aa		12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	RBM14	Q96PK6	669 aa	Known RBP	12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	RGCC	Q9H4X1	137 aa		12.82	□□□□□ -0.36
CLK3-223	ENST00000568488	CCL24	O00175	119 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	OR2F2	O95006	317 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	AMY1A	P04745	511 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	AMY2A	P04746	511 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	GYPB	P06028	91 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	RHCE	P18577	417 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	HTR1D	P28221	377 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	SLC6A1	P30531	599 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	OR3A4P	P47883	348 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	KRT72	Q14CN4	511 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	COQ5	Q5HYK3	327 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	PLBD1	Q6P4A8	553 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	OVCH2	Q7RTZ1	564 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	OR6K6	Q8NGW6	343 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	DYDC1	Q8WWB3	177 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	ZMAT4	Q9H898	229 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	NDUFAF4	Q9P032	175 aa		12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	ZNF256	Q9Y2P7	627 aa	Predicted RBP	12.81	□□□□□ -0.36
CLK3-223	ENST00000568488	IGHV2-26	A0A0B4J1V2	119 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488		A0A0G2JND7	137 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	SEC14L6	B5MCN3	397 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	RBP4	P02753	201 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	CEACAM21	Q3KPI0	293 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	TEX30	Q5JUR7	227 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	MOB3C	Q70IA8	216 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	ZNF695	Q8IW36	515 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	ASCC1	Q8N9N2	400 aa	Known RBP	12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	POC1A	Q8NBT0	407 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	OR5M8	Q8NGP6	311 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	FAM81A	Q8TBF8	368 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	STON2	Q8WXE9	905 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	FAM162A	Q96A26	154 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	RAX2	Q96IS3	184 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	NOL4L	Q96MY1	436 aa	Predicted RBP	12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	ZNF714	Q96N38	554 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	OR8B4	Q96RC9	309 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	CITED4	Q96RK1	184 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	ABHD6	Q9BV23	337 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	TMBIM4	Q9HC24	238 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	CMTM6	Q9NX76	183 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	CD300A	Q9UGN4	299 aa		12.8	□□□□□ -0.36
CLK3-223	ENST00000568488	DNAJC8	O75937	253 aa	Predicted RBP	12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	NXPH2	O95156	264 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	H2BFM	P0C1H6	154 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	LIPE	Q05469	1076 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	GDPD3	Q7L5L3	318 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	SLC37A3	Q8NCC5	494 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	RNF133	Q8WVZ7	376 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	CLEC7A	Q9BXN2	247 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	EGLN3	Q9H6Z9	239 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	PAPOLB	Q9NRJ5	636 aa	Known RBP	12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	SCOC	Q9UIL1	159 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	LINC00527	Q9UJ94	153 aa		12.79	□□□□□ -0.36
CLK3-223	ENST00000568488	PLEC	Q15149	4684 aa	Known RBP	12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	BBIP1	A8MTZ0	92 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	ARHGDIB	P52566	201 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	SNAPC1	Q16533	368 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	METTL21C	Q5VZV1	264 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	OR52L1	Q8NGH7	329 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	OR5A2	Q8NGI9	324 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	OR6N2	Q8NGY6	317 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	AMELY	Q99218	206 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	FUZ	Q9BT04	418 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	TMEM133	Q9H2Q1	129 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	VIPAS39	Q9H9C1	493 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	DPM3	Q9P2X0	92 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	SESN1	Q9Y6P5	492 aa		12.78	□□□□□ -0.36
CLK3-223	ENST00000568488	OR5B21	A6NL26	309 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488		K7N7A8	449 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488		M0QZK8	103 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488	CLU	P10909	449 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488	NCK1	P16333	377 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488	KLF10	Q13118	480 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488	DEFB136	Q30KP8	78 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488	ZNF260	Q3ZCT1	412 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488	PLCXD3	Q63HM9	321 aa		12.77	□□□□□ -0.37
CLK3-223	ENST00000568488	ZBTB49	Q6ZSB9	765 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 63 ms