RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TNFRSF14Q92956 283 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 C8orf44Q96CB5 159 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SGTBQ96EQ0 304 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 OPALINQ96PE5 141 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 HINT2Q9BX68 163 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 UPF3BQ9BZI7 483 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 TM6SF2Q9BZW4 377 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 ACTR3CQ9C0K3 210 aaPredicted RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 NDEL1Q9GZM8 345 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 HDHD2Q9H0R4 259 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 RAB1BQ9H0U4 201 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 GOLPH3Q9H4A6 298 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 DUSP21Q9H596 190 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 DYRK4Q9NR20 520 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SDHAF3Q9NRP4 125 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 RGS18Q9NS28 235 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 LYARQ9NX58 379 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 ADA2Q9NZK5 511 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 IFNKQ9P0W0 207 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 RAB23Q9ULC3 237 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 SLC22A14Q9Y267 594 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 POFUT2Q9Y2G5 429 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 RBMX2Q9Y388 322 aaKnown RBP0.95□□□□□ -2.26
VPS35-207ENST00000568191 PPIL1Q9Y3C6 166 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 DYSFO75923 2080 aa0.95□□□□□ -2.26
VPS35-207ENST00000568191 COL11A1P12107 1806 aaPredicted RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 BAHCC1Q9P281 2608 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 ZCCHC6Q5VYS8 1495 aaKnown RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 IGKV1-6A0A0C4DH72 117 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 C1orf232A0A0U1RR37 186 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 KBTBD11-OT1A0A1B0GTJ5 212 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 F8VZ95 297 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 GOLGA8RI6L899 631 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 M0R1X1 148 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 OVOL1O14753 267 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 ZBTB5O15062 677 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 SIVA1O15304 175 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CALUO43852 315 aaPredicted RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 GMDSO60547 372 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 HUS1O60921 280 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 SCN2BO60939 215 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 GATBO75879 557 aaKnown RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 SCO1O75880 301 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 LCA5LO95447 670 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 IGKV1-39P01597 117 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 IGKV1D-39P04432 117 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 IFI30P13284 250 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 HOXB8P17481 243 aaPredicted RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 RAB4AP20338 218 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 IL12BP29460 328 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CD40LGP29965 261 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CFHR2P36980 270 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 NBL1P41271 181 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 MRPL19P49406 292 aaKnown RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 PSMD4P55036 377 aaKnown RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 ATP5J2P56134 94 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 TAS2R43P59537 309 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 RAB10P61026 200 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 PSMC5P62195 406 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 SKP1P63208 163 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 LCN2P80188 198 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 BTN1A1Q13410 526 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 GNA13Q14344 377 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 PSG3Q16557 428 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 TMEM69Q5SWH9 247 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 C8orf74Q6P047 294 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 MORN3Q6PF18 240 aaPredicted RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 ASCL4Q6XD76 172 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 RTL4Q6ZR62 310 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CYP4Z1Q86W10 505 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 C8orf31Q8N9H6 132 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 LRRC75AQ8NAA5 344 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 OR7G1Q8NGA0 311 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 OR10W1Q8NGF6 305 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 OR6Q1Q8NGQ2 317 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 OR52E5Q8NH55 327 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 OR1L1Q8NH94 360 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CA5BP1Q8WTZ4 195 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 PIH1D2Q8WWB5 315 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CDKL2Q92772 493 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 NAT6Q93015 286 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 S100PBPQ96BU1 408 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 LRRC45Q96CN5 670 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 HAUS1Q96CS2 278 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 ZNF514Q96K75 400 aaPredicted RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 JSRP1Q96MG2 331 aaPredicted RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 GLT1D1Q96MS3 346 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CSPG4P5Q96PW8 444 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 ALS2CR12Q96Q35 445 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 CHID1Q9BWS9 393 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 NSRP1Q9H0G5 558 aaKnown RBP0.94□□□□□ -2.26
VPS35-207ENST00000568191 ABCG5Q9H222 651 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 DSN1Q9H410 356 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 PLEKHF2Q9H8W4 249 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 PSTPIP2Q9H939 334 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 UCK1Q9HA47 277 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 PRSS16Q9NQE7 514 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 MS4A12Q9NXJ0 267 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 EURLQ9NYK6 297 aa0.94□□□□□ -2.26
VPS35-207ENST00000568191 NKIRAS1Q9NYS0 192 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms