RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 C2orf50Q96LR7 162 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 ADAT1Q9BUB4 502 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 BANF2Q9H503 90 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 METTL8Q9H825 291 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 UNKLQ9H9P5 680 aaKnown RBP11.63□□□□□ -0.55
VPS4A-204ENST00000566354 SEC61A2Q9H9S3 476 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 C19orf12Q9NSK7 152 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 OR5AC2Q9NZP5 309 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 WIF1Q9Y5W5 379 aa11.63□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF354AO60765 605 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-204ENST00000566354 CSTBP04080 98 aaKnown RBP11.62□□□□□ -0.55
VPS4A-204ENST00000566354 HCKP08631 526 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 RFC3P40938 356 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 OR3A2P47893 321 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 ARFRP1Q13795 201 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 ANKRD55Q3KP44 614 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 NSUN5P2Q63ZY6 315 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 UEVLDQ8IX04 471 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 OR8B12Q8NGG6 310 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 OR2Y1Q8NGV0 311 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 ADAMTS17Q8TE56 1095 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 CT55Q8WUE5 264 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 WNT2BQ93097 391 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 ARHGAP5-AS1Q96IT6 56 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 SMIM8Q96KF7 97 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 GPR84Q9NQS5 396 aa11.62□□□□□ -0.55
VPS4A-204ENST00000566354 PHF3Q92576 2039 aaKnown RBP11.62□□□□□ -0.55
VPS4A-204ENST00000566354 FIGNL2A6NMB9 653 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 TAAR5O14804 337 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 RAD51DO75771 328 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 IGHG1P01857 330 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 HEXAP06865 529 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF17P17021 662 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 AMY2BP19961 511 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF121P58317 390 aaPredicted RBP11.61□□□□□ -0.55
VPS4A-204ENST00000566354 TAS2R46P59540 309 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 MYBPHQ13203 477 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 SAPCD1Q5SSQ6 148 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 FAM89BQ8N5H3 189 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 NANPQ8TBE9 248 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 OR10C1Q96KK4 312 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 MRGPRX4Q96LA9 322 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 GPER1Q99527 375 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 SLC5A7Q9GZV3 580 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 ZFP57Q9NU63 452 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 EFNA2O43921 213 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 CD63P08962 238 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 PGA4P0DJD7 388 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 PGA3P0DJD8 388 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 CEACAM1P13688 526 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 PI3P19957 117 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 CCL1P22362 96 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 CAV2P51636 162 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 IL15RAQ13261 267 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 C21orf62-AS1Q17RA5 79 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 AADACL3Q5VUY0 350 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 DOK3Q7L591 496 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 NOXO1Q8NFA2 376 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 OR13G1Q8NGZ3 307 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 THAP3Q8WTV1 239 aaPredicted RBP11.61□□□□□ -0.55
VPS4A-204ENST00000566354 SFT2D1Q8WV19 159 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 OR10A2Q9H208 303 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 RHOFQ9HBH0 211 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 OR2S2Q9NQN1 319 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.61□□□□□ -0.55
VPS4A-204ENST00000566354 OSGIN2Q9Y236 505 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 MEMO1Q9Y316 297 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 HS3ST3B1Q9Y662 390 aa11.61□□□□□ -0.55
VPS4A-204ENST00000566354 MSX1P28360 303 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 GPX4P36969 197 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 FOLR3P41439 243 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 NPBWR1P48145 328 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF41P51814 821 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 RAB32Q13637 225 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 SURF2Q15527 256 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 SLC25A53Q5H9E4 307 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 POC1AQ8NBT0 407 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 ADPRHL1Q8NDY3 354 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 BHLHE23Q8NDY6 225 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 DMBX1Q8NFW5 382 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 SSC4DQ8WTU2 575 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 EMG1Q92979 244 aaKnown RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 FAM71F1Q96KD3 344 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 MICU1Q9BPX6 476 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 NRIP2Q9BQI9 281 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 SOX7Q9BT81 388 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 ST6GALNAC5Q9BVH7 336 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 HRH4Q9H3N8 390 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 OPA3Q9H6K4 179 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 TMEM231Q9H6L2 316 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 RCC2Q9P258 522 aaKnown RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 ZNF319Q9P2F9 582 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 GHRLQ9UBU3 117 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 C19orf25Q9UFG5 118 aaPredicted RBP11.6□□□□□ -0.55
VPS4A-204ENST00000566354 A0A1W2PP11 408 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 COX5BP10606 129 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 SLC2A1P11166 492 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 DEFA6Q01524 100 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 PCOLCEQ15113 449 aa11.6□□□□□ -0.55
VPS4A-204ENST00000566354 GFOD2Q3B7J2 385 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms