RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ACOD1A6NK06 481 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 GNGT2O14610 69 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 GSC2O15499 205 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 OSMP13725 252 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 PRKACGP22612 351 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 LGALS4P56470 323 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 CDK5Q00535 292 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 APOFQ13790 326 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 GK3PQ14409 553 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 HABP2Q14520 560 aaPredicted RBP13.66□□□□□ -0.22
CLN3-211ENST00000564091 ZNF273Q14593 569 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 SMIM21Q3B7S5 101 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 NSUN5P1Q3KNT7 163 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 SLC35D3Q5M8T2 416 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 ZNF782Q6ZMW2 699 aaPredicted RBP13.66□□□□□ -0.22
CLN3-211ENST00000564091 ADGRG5Q8IZF4 528 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 DYNAPQ8N1N2 210 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 POC1AQ8NBT0 407 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 OR2T27Q8NH04 317 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 LRGUKQ96M69 825 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 MROQ9BYG7 248 aa13.66□□□□□ -0.22
CLN3-211ENST00000564091 A0A1W2PPH5 198 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 SLC1A7O00341 560 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 IGLV3-1P01715 115 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 CD28P10747 220 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 PIPP12273 146 aaPredicted RBP13.65□□□□□ -0.22
CLN3-211ENST00000564091 ATP6V1B1P15313 513 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 HAAOP46952 286 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 OXLD1Q5BKU9 147 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 KCTD18Q6PI47 426 aaPredicted RBP13.65□□□□□ -0.22
CLN3-211ENST00000564091 DEGS2Q6QHC5 323 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 ZNF561Q8N587 486 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 YIPF3Q9GZM5 350 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 C1orf21Q9H246 121 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 ZNF702PQ9H963 129 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 GPR173Q9NS66 373 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 ENPP5Q9UJA9 477 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 COPS3Q9UNS2 423 aa13.65□□□□□ -0.22
CLN3-211ENST00000564091 MEX3AA1L020 520 aaKnown RBP13.64□□□□□ -0.23
CLN3-211ENST00000564091 NRASP01111 189 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 PGA5P0DJD9 388 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 MFGE8Q08431 387 aaPredicted RBP13.64□□□□□ -0.23
CLN3-211ENST00000564091 ZNF684Q5T5D7 378 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 CCBE1Q6UXH8 406 aaPredicted RBP13.64□□□□□ -0.23
CLN3-211ENST00000564091 LIAT1Q6ZQX7 453 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 CANT1Q8WVQ1 401 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 ASB9Q96DX5 294 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 OR8B4Q96RC9 309 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 ZNF556Q9HAH1 456 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 SERTAD4Q9NUC0 356 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 TVP23BQ9NYZ1 205 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 USE1Q9NZ43 259 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 OR14J1Q9UGF5 321 aa13.64□□□□□ -0.23
CLN3-211ENST00000564091 KMT2CQ8NEZ4 4911 aaKnown RBP13.63□□□□□ -0.23
CLN3-211ENST00000564091 hCG_1809904A0A1W2PP81 198 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 A0A1W2PPE2 198 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 A0A1W2PR64 198 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 A0A1W2PRV1 198 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 CCDC182A6NF36 153 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 A6NIN4 97 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 FAM90A8PA6NJQ4 464 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 J3QT63 122 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 PIN1P1O15428 100 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 MAGEB4O15481 346 aaPredicted RBP13.63□□□□□ -0.23
CLN3-211ENST00000564091 ATP8B1O43520 1251 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 FBXO24O75426 580 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 E2F6O75461 281 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 DHRS3O75911 302 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 NXPH2O95156 264 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 TK1P04183 234 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 ROM1Q03395 351 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 SNAPC1Q16533 368 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 ZBTB37Q5TC79 503 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 ASRGL1Q7L266 308 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 TMEM219Q86XT9 240 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 ZNF573Q86YE8 665 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 ZNF679Q8IYX0 411 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 NRIP2Q9BQI9 281 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 MMP28Q9H239 520 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 NUFIP1Q9UHK0 495 aaKnown RBP13.63□□□□□ -0.23
CLN3-211ENST00000564091 IKZF2Q9UKS7 526 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 GTF2A1LQ9UNN4 478 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 TCF19Q9Y242 345 aa13.63□□□□□ -0.23
CLN3-211ENST00000564091 VGLL3A8MV65 326 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 NOS1APO75052 506 aaPredicted RBP13.62□□□□□ -0.23
CLN3-211ENST00000564091 ZNF254O75437 659 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 TTRP02766 147 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 T-ENOLP0DO92 83 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 RIDAP52758 137 aaKnown RBP13.62□□□□□ -0.23
CLN3-211ENST00000564091 DLX6P56179 175 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 ESRRGP62508 458 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 ZNF829Q3KNS6 432 aaPredicted RBP13.62□□□□□ -0.23
CLN3-211ENST00000564091 CLVS2Q5SYC1 327 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 LDLRAD2Q5SZI1 272 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 ANGPTL5Q86XS5 388 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 ITFG2Q969R8 447 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 OR5M11Q96RB7 305 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 SLC25A19Q9HC21 320 aa13.62□□□□□ -0.23
CLN3-211ENST00000564091 PQLC2LA1A4F0 135 aa13.61□□□□□ -0.23
CLN3-211ENST00000564091 A6NDX4 124 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms