RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 TMED6Q8WW62 240 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 LCN9Q8WX39 176 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF486Q96H40 463 aaPredicted RBP4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 RARRES2Q99969 163 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 CDCA4Q9BXL8 241 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 QTRT1Q9BXR0 403 aaKnown RBP4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 CHIAQ9BZP6 476 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 RNF167Q9H6Y7 350 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 ACOT13Q9NPJ3 140 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF446Q9NWS9 450 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 B3GNT2Q9NY97 397 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 EHFQ9NZC4 300 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 TAAR2Q9P1P5 351 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 CD84Q9UIB8 345 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 RIMS3Q9UJD0 308 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 MRPS18CQ9Y3D5 142 aaKnown RBP4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 ZDBF2Q9HCK1 2354 aa4.25□□□□□ -1.73
VPS35P1-201ENST00000563400 FER1L5A0AVI2 2057 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 TRPM6Q9BX84 2022 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 KIAA1549LQ6ZVL6 1849 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 IGLV3-16A0A075B6K0 115 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 SRRM3A6NNA2 597 aaPredicted RBP4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 SMKR1H3BMG3 65 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 H3BNH8 94 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 CDIPTO14735 213 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 BIRC5O15392 142 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 TNFSF12O43508 249 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 SMIM24O75264 130 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 TSHBP01222 138 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 HLA-AP01891 365 aaKnown RBP4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 PIRTP0C851 137 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ZSCAN5DPP0CG00 497 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ME2P23368 584 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 CMPK1P30085 196 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 GRPRP30550 384 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 SERPINB1P30740 379 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 GLP1RP43220 463 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF121P58317 390 aaPredicted RBP4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ARL6IP1Q15041 203 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 CYP51A1Q16850 503 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ECSCRQ19T08 205 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 HECTD2Q5U5R9 776 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 MEDAGQ5VYS4 303 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 LPCAT4Q643R3 524 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ACOT7LQ6ZUV0 252 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 STPG2Q8N412 459 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 OR52B6Q8NGF0 335 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 OR5L1Q8NGL2 311 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 OR13C4Q8NGS5 318 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 PIGXQ8TBF5 258 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ADAMTS16Q8TE57 1224 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 APH1BQ8WW43 257 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 RERGQ96A58 199 aaPredicted RBP4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 SLC25A38Q96DW6 304 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 STACQ99469 402 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 UGT2B28Q9BY64 529 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ACTR6Q9GZN1 396 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 NXF2Q9GZY0 626 aaKnown RBP4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ARL6Q9H0F7 186 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF385DQ9H6B1 395 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 CLMPQ9H6B4 373 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 WDR41Q9HAD4 459 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 PARVBQ9HBI1 364 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 TMEM27Q9HBJ8 222 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 PRODH2Q9UF12 536 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 POU2F3Q9UKI9 436 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF256Q9Y2P7 627 aaPredicted RBP4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 USH1CQ9Y6N9 552 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 THADAQ6YHU6 1953 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 CACNA1IQ9P0X4 2223 aa4.24□□□□□ -1.73
VPS35P1-201ENST00000563400 TTC28Q96AY4 2481 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 CHD5Q8TDI0 1954 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 IGHV4-61A0A0C4DH41 118 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 LOC100131303A0A0U1RQF7 123 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF816-ZNF321PA0A0X1KG74 233 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 GNG14A0A1W2PPG7 69 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 H7C2Y5 167 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 ACOX3O15254 700 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 PHF1O43189 567 aaPredicted RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 FKBP6O75344 327 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 IGHV4-59P01825 116 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 HIST1H1CP16403 213 aaKnown RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 PVALBP20472 110 aaPredicted RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 RPA3P35244 121 aaPredicted RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 CD79BP40259 229 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 RFX2P48378 723 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 MNAT1P51948 309 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 UBE2E1P51965 193 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 RAP1GDS1P52306 607 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 SSBP2P81877 361 aaPredicted RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 RELAQ04206 551 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 Q0VFX4 171 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 BIKQ13323 160 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 TAB1Q15750 504 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 CCDC153Q494R4 210 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 FAM27D1Q5T7N8 215 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 SAXO2Q658L1 398 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 PWWP2BQ6NUJ5 590 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 MRPL52Q86TS9 123 aaKnown RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF491Q8N8L2 437 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms