RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 FAAP20Q6NZ36 180 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 FAHD2BQ6P2I3 314 aaPredicted RBP8.05□□□□□ -1.12
VPS39-205ENST00000562258 GLCCI1Q86VQ1 547 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 OR10J5Q8NHC4 309 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 SPSB1Q96BD6 273 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 FAHD2AQ96GK7 314 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 SNX18Q96RF0 628 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 MRPL22Q9NWU5 206 aaKnown RBP8.05□□□□□ -1.12
VPS39-205ENST00000562258 CNIH1O95406 144 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 SMIM18P0DKX4 95 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 ELK1P19419 428 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 PLA2G5P39877 138 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 TAS2R19P59542 299 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 ERVS71-1P61550 626 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 RIPPLY2Q5TAB7 128 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 NSUN5P2Q63ZY6 315 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 CLEC2AQ6UVW9 174 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 TFAP2EQ6VUC0 442 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 CDC20BQ86Y33 519 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 GABRG1Q8N1C3 465 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 PARP16Q8N5Y8 322 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 CCDC71LQ8N9Z2 235 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 OR4D6Q8NGJ1 314 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 ITLN1Q8WWA0 313 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 MGAT4CQ9UBM8 478 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 LSM5Q9Y4Y9 91 aaKnown RBP8.05□□□□□ -1.12
VPS39-205ENST00000562258 LHFPL6Q9Y693 200 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 SZT2Q5T011 3432 aa8.05□□□□□ -1.12
VPS39-205ENST00000562258 ZNF724A8MTY0 619 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 B8ZZF3 427 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 BPNT1O95861 308 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OR8U9P0C7N5 309 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 NR4A2P43354 598 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CDONQ4KMG0 1287 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 UBE2NLQ5JXB2 153 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 SLC25A47Q6Q0C1 308 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 C6orf201Q7Z4U5 140 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OR8U1Q8NH10 309 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OR1S1Q8NH92 325 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 KCTD12Q96CX2 325 aaKnown RBP8.04□□□□□ -1.12
VPS39-205ENST00000562258 MAP6Q96JE9 813 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OR2V2Q96R30 315 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 FAAP24Q9BTP7 215 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OPA3Q9H6K4 179 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 AIPO00170 330 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CREBL2O60519 120 aaPredicted RBP8.04□□□□□ -1.12
VPS39-205ENST00000562258 CELA3BP08861 270 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CSF1P09603 554 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 ASCL1P50553 236 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 GNMTQ14749 295 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 RFPL4BQ6ZWI9 263 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 ZNF554Q86TJ5 538 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 MDS2Q8NDY4 140 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 COQ8AQ8NI60 647 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 PCGF1Q9BSM1 259 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 TRGV10A0A0A0MS01 117 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 ZSCAN5BA6NJL1 495 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OR4C45A6NMZ5 311 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OR2AT4A6NND4 320 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 GMDSO60547 372 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 PNPP00491 289 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CECR9P0C854 216 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 EPXP11678 715 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 IGHV1-2P23083 117 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 NFYAP23511 347 aaPredicted RBP8.04□□□□□ -1.12
VPS39-205ENST00000562258 SNCAP37840 140 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CDKN1AP38936 164 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 NANOS3P60323 173 aaKnown RBP8.04□□□□□ -1.12
VPS39-205ENST00000562258 BSPH1Q075Z2 132 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 STEAP1BQ6NZ63 245 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 LRRTM1Q86UE6 522 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CMTM4Q8IZR5 234 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 OR52I2Q8NH67 350 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 KIRREL1Q96J84 757 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 PIGMQ9H3S5 423 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CLN8Q9UBY8 286 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 CYB5R1Q9UHQ9 305 aa8.04□□□□□ -1.12
VPS39-205ENST00000562258 ZNF230Q9UIE0 474 aaPredicted RBP8.04□□□□□ -1.12
VPS39-205ENST00000562258 IGLV1-36A0A0B4J1U3 117 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.03□□□□□ -1.12
VPS39-205ENST00000562258 HMX3A6NHT5 357 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 E9PLN8 166 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 SLC22A5O76082 557 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 GAAP10253 952 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CBR1P16152 277 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 OR2AK2Q8NG84 335 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 OR5H6Q8NGV6 325 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 MRGPRDQ8TDS7 321 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 TCTEX1D2Q8WW35 142 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 ADAT3Q96EY9 351 aaPredicted RBP8.03□□□□□ -1.12
VPS39-205ENST00000562258 PRRT1Q99946 306 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 VKORC1Q9BQB6 163 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CXXC4Q9H2H0 198 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CNTD2Q9H8S5 307 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CA10Q9NS85 328 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 MPC1Q9Y5U8 109 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CACNG2Q9Y698 323 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 ARFGEF3Q5TH69 2177 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 RFPL4AA6NLU0 287 aa8.03□□□□□ -1.12
VPS39-205ENST00000562258 CEBPZOSA8MTT3 80 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms