RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ERVK11-1P61568 191 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 CDK5Q00535 292 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 ROM1Q03395 351 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 LCN1P1Q5VSP4 162 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 ARHGAP24Q8N264 748 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 OR4F17Q8NGA8 305 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 OR10G2Q8NGC3 310 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 MRAPQ8TCY5 172 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 PHF21AQ96BD5 680 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 OR4F4Q96R69 305 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 OR8B4Q96RC9 309 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 NRIP2Q9BQI9 281 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 YIPF3Q9GZM5 350 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 U3KQV3 271 aa13.25□□□□□ -0.29
CLN3-208ENST00000561505 E2F6O75461 281 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 SRSF10O75494 262 aaKnown RBP13.24□□□□□ -0.29
CLN3-208ENST00000561505 CCL3L1P16619 93 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 FAHP16930 419 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 CD83Q01151 205 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 RIPPLY1Q0D2K3 151 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 HABP2Q14520 560 aaPredicted RBP13.24□□□□□ -0.29
CLN3-208ENST00000561505 ZNF273Q14593 569 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 CNN3Q15417 329 aaKnown RBP13.24□□□□□ -0.29
CLN3-208ENST00000561505 SMIM21Q3B7S5 101 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 CEP78Q5JTW2 689 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 ZNF626Q68DY1 528 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 PLBD1Q6P4A8 553 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 HAGHLQ6PII5 290 aaPredicted RBP13.24□□□□□ -0.29
CLN3-208ENST00000561505 OR2T27Q8NH04 317 aa13.24□□□□□ -0.29
CLN3-208ENST00000561505 CITED2Q99967 270 aaPredicted RBP13.24□□□□□ -0.29
CLN3-208ENST00000561505 NUFIP1Q9UHK0 495 aaKnown RBP13.24□□□□□ -0.29
CLN3-208ENST00000561505 PQLC2LA1A4F0 135 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 FAM90A22PA8MWA6 464 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 J3QT63 122 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 K7N7A8 449 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 SLC1A7O00341 560 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 ZNF254O75437 659 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 TK1P04183 234 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 HMGN1P05114 100 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 LGALS4P56470 323 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 MS4A2Q01362 244 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 TRIM25Q14258 630 aaKnown RBP13.23□□□□□ -0.29
CLN3-208ENST00000561505 GINS1Q14691 196 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 HSP90B2PQ58FF3 399 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 ZNF573Q86YE8 665 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 CPOQ8IVL8 374 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 LYG1Q8N1E2 194 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 GIPC3Q8TF64 312 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 FOXRED1Q96CU9 486 aaPredicted RBP13.23□□□□□ -0.29
CLN3-208ENST00000561505 R3HDM4Q96D70 268 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 TEAD3Q99594 435 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 OCSTAMPQ9BR26 566 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 PBOV1Q9GZY1 135 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 SEBOXQ9HB31 216 aaPredicted RBP13.23□□□□□ -0.29
CLN3-208ENST00000561505 DNAJB9Q9UBS3 223 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 PITPNC1Q9UKF7 332 aa13.23□□□□□ -0.29
CLN3-208ENST00000561505 TMEM269A0A1B0GVZ9 245 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 PRR32B1ATL7 298 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 H3BN98 237 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 SYNGR1O43759 233 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 ZNF737O75373 536 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 RAB13P51153 203 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 NSUN5P1Q3KNT7 163 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 FAM98BQ52LJ0 330 aaKnown RBP13.22□□□□□ -0.29
CLN3-208ENST00000561505 DMRTC1Q5HYR2 192 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 FOXB2Q5VYV0 432 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 KCTD18Q6PI47 426 aaPredicted RBP13.22□□□□□ -0.29
CLN3-208ENST00000561505 Q6ZS46 218 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 MOB3CQ70IA8 216 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 KRT77Q7Z794 578 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 PIGWQ7Z7B1 504 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 FAM81AQ8TBF8 368 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 RPS4Y2Q8TD47 263 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 ZNF488Q96MN9 340 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 PRSS22Q9GZN4 317 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 GPR84Q9NQS5 396 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 ENPP5Q9UJA9 477 aa13.22□□□□□ -0.29
CLN3-208ENST00000561505 TENM3Q9P273 2699 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 DLGAP1O14490 977 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 DHRS3O75911 302 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 NRASP01111 189 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 TTRP02766 147 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 RAP2AP10114 183 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 CAPZA1P52907 286 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 HCCSP53701 268 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 TMEM179BQ7Z7N9 219 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 DHFR2Q86XF0 187 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 ZNF679Q8IYX0 411 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 BBS1Q8NFJ9 593 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 OR51E1Q8TCB6 317 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 OTULINQ96BN8 352 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 LAMP5Q9UJQ1 280 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 PIGLQ9Y2B2 252 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 POLDIP2Q9Y2S7 368 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 V9GYS6 101 aa13.21□□□□□ -0.29
CLN3-208ENST00000561505 A0A1B0GTI1 187 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 DHRS7CA6NNS2 312 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 ZNF728P0DKX0 622 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 OSMP13725 252 aa13.2□□□□□ -0.3
CLN3-208ENST00000561505 COX7A1P24310 79 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms