RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 NKX2-1P43699 371 aaPredicted RBP6.34□□□□□ -1.39
USP3-210ENST00000559192 OR1D5P58170 312 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ZNF154Q13106 437 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 PDCD1Q15116 288 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 LCN15Q6UWW0 184 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 SYT13Q7L8C5 426 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ANKRD33Q7Z3H0 272 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 GDF15Q99988 308 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 LMAN1LQ9HAT1 526 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 TEX50A0A1B0GTY4 177 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 M0R1X1 148 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 M0R2Z0 102 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 DNASE2O00115 360 aaPredicted RBP6.34□□□□□ -1.39
USP3-210ENST00000559192 SOCS1O15524 211 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ZNF205O95201 554 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 GUSBP08236 651 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 GSTP1P09211 210 aaKnown RBP6.34□□□□□ -1.39
USP3-210ENST00000559192 OR5H8P0DN80 308 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 GFERP55789 205 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 PLGLB1Q02325 96 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ACOT6Q3I5F7 207 aaPredicted RBP6.34□□□□□ -1.39
USP3-210ENST00000559192 C5orf46Q6UWT4 87 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 TFAP2EQ6VUC0 442 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 C20orf196Q8IYI0 205 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ZNF485Q8NCK3 441 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ADPRHL1Q8NDY3 354 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 OR51F2Q8NH61 342 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ASB5Q8WWX0 329 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 THOC3Q96J01 351 aaKnown RBP6.34□□□□□ -1.39
USP3-210ENST00000559192 ZNF426Q9BUY5 554 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 FOXQ1Q9C009 403 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 TLNRD1Q9H1K6 362 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 OR5AC2Q9NZP5 309 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.34□□□□□ -1.39
USP3-210ENST00000559192 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.34□□□□□ -1.39
USP3-210ENST00000559192 SPINT1O43278 529 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 LMX1BO60663 402 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 FAHP16930 419 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ADRA2CP18825 462 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 ID4P47928 161 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 TMEM33P57088 247 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 FFAR4Q5NUL3 377 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 AADACL3Q5VUY0 350 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 CATSPERDQ86XM0 798 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 PLEKHA2Q9HB19 425 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 CDH20Q9HBT6 801 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 GHRLQ9UBU3 117 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 TRAPPC1Q9Y5R8 145 aa6.34□□□□□ -1.39
USP3-210ENST00000559192 CYR61O00622 381 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 KLF4O43474 513 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 TUSC2O75896 110 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 TBX6O95947 436 aaPredicted RBP6.34□□□□□ -1.4
USP3-210ENST00000559192 CFIP05156 583 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 KLK3P07288 261 aaPredicted RBP6.34□□□□□ -1.4
USP3-210ENST00000559192 ERGP11308 486 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 EDN3P14138 238 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 RPL7P18124 248 aaKnown RBP6.34□□□□□ -1.4
USP3-210ENST00000559192 OTX2P32243 289 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 ATG4DQ86TL0 474 aaPredicted RBP6.34□□□□□ -1.4
USP3-210ENST00000559192 ZNF429Q86V71 674 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 C17orf78Q8N4C9 275 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 PACRGQ96M98 296 aaPredicted RBP6.34□□□□□ -1.4
USP3-210ENST00000559192 EDEM2Q9BV94 578 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 PLA2G2FQ9BZM2 168 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 RAB33BQ9H082 229 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 FAM60AQ9NP50 221 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 ABI3Q9P2A4 366 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 MMACHCQ9Y4U1 282 aa6.34□□□□□ -1.4
USP3-210ENST00000559192 NDUFS8O00217 210 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 OR2A4O95047 310 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 FAM157BP0CG42 384 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 CD79AP11912 226 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 DRD1P21728 446 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 SRPXP78539 464 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 FOXF1Q12946 379 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 MICBQ29980 383 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 TMEM196Q5HYL7 178 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 WDR73Q6P4I2 378 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 MRPL21Q7Z2W9 205 aaKnown RBP6.33□□□□□ -1.4
USP3-210ENST00000559192 C6orf201Q7Z4U5 140 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 KDF1Q8NAX2 398 aaPredicted RBP6.33□□□□□ -1.4
USP3-210ENST00000559192 PSMF1Q92530 271 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 LRRC3BQ96PB8 259 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 OR2A7Q96R45 310 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 RARRES3Q9UL19 164 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 ELOA3CA0A087WX78 387 aaPredicted RBP6.33□□□□□ -1.4
USP3-210ENST00000559192 NSG1A0A0A6YYJ2 146 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 A0A1B0GV72 72 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 APOBEC1P41238 236 aaKnown RBP6.33□□□□□ -1.4
USP3-210ENST00000559192 ZNF684Q5T5D7 378 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 MISPQ8IVT2 679 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 RTN4IP1Q8WWV3 396 aaPredicted RBP6.33□□□□□ -1.4
USP3-210ENST00000559192 AICDAQ9GZX7 198 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 TMEM74BQ9NUR3 256 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 SCN3AQ9NY46 2000 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 C7orf77A4D0Y5 90 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 FAM166BA8MTA8 275 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 ADAM11O75078 769 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 TMEM11P17152 192 aa6.33□□□□□ -1.4
USP3-210ENST00000559192 VEGFBP49765 207 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms