RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ABCB10	Q9NRK6	738 aa		10.23	□□□□□ -0.77
SHMT2-223	ENST00000556689	C19orf12	Q9NSK7	152 aa		10.23	□□□□□ -0.77
SHMT2-223	ENST00000556689	PITPNC1	Q9UKF7	332 aa		10.23	□□□□□ -0.77
SHMT2-223	ENST00000556689	TCF19	Q9Y242	345 aa		10.23	□□□□□ -0.77
SHMT2-223	ENST00000556689	SAMHD1	Q9Y3Z3	626 aa	Known RBP	10.23	□□□□□ -0.77
SHMT2-223	ENST00000556689	LRP12	Q9Y561	859 aa		10.23	□□□□□ -0.77
SHMT2-223	ENST00000556689	ORC6	Q9Y5N6	252 aa		10.23	□□□□□ -0.77
SHMT2-223	ENST00000556689		A6NDX4	124 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	ATP6V1G2	O95670	118 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	H2BFM	P0C1H6	154 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	CLU	P10909	449 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	COX7A1	P24310	79 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	ACKR3	P25106	362 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	GPM6A	P51674	278 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	ARSJ	Q5FYB0	599 aa	Predicted RBP	10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	LHFPL4	Q7Z7J7	247 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	TMEM219	Q86XT9	240 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	ZDHHC13	Q8IUH4	622 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	PQLC1	Q8N2U9	271 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	OR6N2	Q8NGY6	317 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	RPS4Y2	Q8TD47	263 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	HPSE2	Q8WWQ2	592 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	EME1	Q96AY2	570 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	INTS14	Q96SY0	518 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	TSSK6	Q9BXA6	273 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	OSBPL10	Q9BXB5	764 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	FGF23	Q9GZV9	251 aa	Predicted RBP	10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	OR51I2	Q9H344	312 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	C8orf4	Q9NR00	106 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	RASL12	Q9NYN1	266 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	USE1	Q9NZ43	259 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689	ZNF222	Q9UK12	451 aa		10.22	□□□□□ -0.77
SHMT2-223	ENST00000556689		A0A1W2PRX2	142 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	ZNF732	B4DXR9	585 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	TNFRSF11B	O00300	401 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	GAST	P01350	101 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	OPRL1	P41146	370 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	HMGA2	P52926	109 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	ERVFRD-1	P60508	538 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	GNG3	P63215	75 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	PLA1A	Q53H76	456 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	RASSF6	Q6ZTQ3	369 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	SHF	Q7M4L6	423 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	THAP5	Q7Z6K1	395 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	ERI1	Q8IV48	349 aa	Known RBP	10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	DYNAP	Q8N1N2	210 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	OR5AU1	Q8NGC0	362 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	OR8D4	Q8NGM9	314 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	OR2T27	Q8NH04	317 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	MALSU1	Q96EH3	234 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	WWC2-AS2	Q96NR7	200 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	C9orf16	Q9BUW7	83 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	ZNF556	Q9HAH1	456 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	TBC1D23	Q9NUY8	699 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	ENOPH1	Q9UHY7	261 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	BAIAP2	Q9UQB8	552 aa		10.21	□□□□□ -0.77
SHMT2-223	ENST00000556689	RFPL4A	A6NLU0	287 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	RFPL4AL1	F8VTS6	287 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	MTRF1	O75570	445 aa	Known RBP	10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	CCNB2	O95067	398 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	IFNG	P01579	166 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	ALDOB	P05062	364 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	PF4V1	P10720	104 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	CCL3L1	P16619	93 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	GSTT1	P30711	240 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	PRDX2	P32119	198 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	VDAC2	P45880	294 aa	Predicted RBP	10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	BLCAP	P62952	87 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	SLC35A2	P78381	396 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	CD83	Q01151	205 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	SLC34A1	Q06495	639 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	CEACAM21	Q3KPI0	293 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	LINC01590	Q5TEZ4	76 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689		Q6ZS46	218 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	CALHM1	Q8IU99	346 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF561	Q8N587	486 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR2T33	Q8NG76	320 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR4M1	Q8NGD0	313 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR9Q2	Q8NGE9	314 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR5A2	Q8NGI9	324 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	DNAJC9	Q8WXX5	260 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	FOXRED1	Q96CU9	486 aa	Predicted RBP	10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	LYZL4	Q96KX0	146 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	AMELY	Q99218	206 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	OCSTAMP	Q9BR26	566 aa		10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	TBL2	Q9Y4P3	447 aa	Known RBP	10.2	□□□□□ -0.78
SHMT2-223	ENST00000556689	DNAH9	Q9NYC9	4486 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	WI2-2373I1.2	A0A1W2PRP0	233 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689		G3V2T6	193 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689		H3BNX3	289 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689		H3BUI4	141 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	SLC1A7	O00341	560 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	DUS4L	O95620	317 aa	Known RBP	10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	PF4	P02776	101 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	ARG1	P05089	322 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	MAP2K3	P46734	347 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	KRTAP10-11	P60412	298 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	CD69	Q07108	199 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	SSX2	Q16385	188 aa		10.19	□□□□□ -0.78

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