RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NPRL2Q8WTW4 380 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 PP6455Q8WZ26 134 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 UBE2FQ969M7 185 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 RNFT2Q96EX2 444 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 RDH12Q96NR8 316 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 MYCBPQ99417 103 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 CHST5Q9GZS9 411 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 SNTG1Q9NSN8 517 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 ACOXLQ9NUZ1 547 aa13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 SLC25A10Q9UBX3 287 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 EXOGQ9Y2C4 368 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-209ENST00000554872 M0R1W7 72 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 SLC16A6O15403 523 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 GATBO75879 557 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 CFPP27918 469 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 HAAOP46952 286 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 CCR9P51686 369 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 RPL15P61313 204 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 ERVK11-1P61568 191 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 ARF6P62330 175 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 ACTA2P62736 377 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 ACTG2P63267 376 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 IL24Q13007 206 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 IKZF1Q13422 519 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 DEFB112Q30KQ8 113 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 AWAT1Q58HT5 328 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 Q6YL49 198 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 FGFRL1Q8N441 504 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 ACBD7Q8N6N7 88 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 OR2G2Q8NGZ5 317 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 RHOXF1Q8NHV9 184 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 PLEKHA1Q9HB21 404 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 GPR173Q9NS66 373 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 MAB21L2Q9Y586 359 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 GMPPBQ9Y5P6 360 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 POMT1Q9Y6A1 747 aa13.21□□□□□ -0.29
CCDC88C-209ENST00000554872 LOC107986453A0A1B0GWG9 222 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 RPSAP08865 295 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 SELLP14151 372 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 KIR3DL2P43630 455 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 GUCA2AQ02747 115 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 TMEM244Q5VVB8 128 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 ZBTB49Q6ZSB9 765 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 UTS2BQ765I0 119 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 VMO1Q7Z5L0 202 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 LDLRAD3Q86YD5 345 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 ENTHD1Q8IYW4 607 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 ZNF561Q8N587 486 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 Q8N7P7 452 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 DNAAF1Q8NEP3 725 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 MRPL48Q96GC5 212 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 Q96MT0 163 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 SEBOXQ9HB31 216 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 INPP5EQ9NRR6 644 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 MRPS18AQ9NVS2 196 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 GNG8Q9UK08 70 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 SLC7A11Q9UPY5 501 aa13.2□□□□□ -0.3
CCDC88C-209ENST00000554872 HAX1O00165 279 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 SYNGR1O43759 233 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 KNG1P01042 644 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 IGHA1P01876 353 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 DBTP11182 482 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 FUT6P51993 359 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 GMFBP60983 142 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 ZNF91Q05481 1191 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 MRPL28Q13084 256 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 UBE2V2Q15819 145 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 ZSCAN26Q16670 478 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 ZIK1Q3SY52 487 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 TP53I3Q53FA7 332 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 SYS1Q8N2H4 156 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 SSMEM1Q8WWF3 244 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 TNFRSF14Q92956 283 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 LHX4Q969G2 390 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 LGALS12Q96DT0 336 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 SLC29A1Q99808 456 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 ADI1Q9BV57 179 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 FAM234AQ9H0X4 552 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 METTL8Q9H825 291 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 C8orf4Q9NR00 106 aa13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 SOX21Q9Y651 276 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-209ENST00000554872 LOC100130705A0A1B0GUX0 176 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 MDFIC2A0A1B0GVS7 189 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 DAPL1A0PJW8 107 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 HOXA3O43365 443 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 MELTFP08582 738 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 RAB40BQ12829 278 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 GALEQ14376 348 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 CNN3Q15417 329 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 DMRTC1Q5HYR2 192 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 RUSC1-AS1Q66K80 236 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 NCR3LG1Q68D85 454 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 C16orf87Q6PH81 154 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 CALHM1Q8IU99 346 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 C3orf56Q8N813 242 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 ZNRF1Q8ND25 227 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 HAVCR2Q8TDQ0 301 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 JAM3Q9BX67 310 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 FAM118AQ9NWS6 357 aa13.18□□□□□ -0.3
CCDC88C-209ENST00000554872 FRRS1LQ9P0K9 344 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms