RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SCN3BQ9NY72 215 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 CTSZQ9UBR2 303 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 PSORS1C1Q9UIG5 152 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 METRNQ9UJH8 293 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 DHDHQ9UQ10 334 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 AUP1Q9Y679 476 aa11.98□□□□□ -0.49
CCDC88C-207ENST00000554051 A0A0A6YYJ9 748 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 TNFRSF13BO14836 293 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 AKR7A2O43488 359 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 NDUFB3O43676 98 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 ALX3O95076 343 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 ZFPL1O95159 310 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 ETV1P50549 477 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 ST3GAL4Q11206 333 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 HNRNPA0Q13151 305 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 RNLSQ5VYX0 342 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 ZNF841Q6ZN19 808 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 AHSA2Q719I0 299 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 C19orf18Q8NEA5 215 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 OR5D14Q8NGL3 314 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 TRMT10AQ8TBZ6 339 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 RPS4Y2Q8TD47 263 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 GPR148Q8TDV2 347 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 MYDGFQ969H8 173 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 DACT3Q96B18 629 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 OPALINQ96PE5 141 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 NRIP2Q9BQI9 281 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 NUDT16L1Q9BRJ7 211 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 RHOFQ9HBH0 211 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 BABAM2Q9NXR7 383 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 ERGIC3Q9Y282 383 aa11.97□□□□□ -0.49
CCDC88C-207ENST00000554051 NF1P21359 2839 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 KIR2DS1A0A191URI9 304 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 FAM230AA0A1W2PPH8 454 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 OR2AT4A6NND4 320 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 SIGLEC5O15389 551 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 NXPH2O95156 264 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 ATP6V1G2O95670 118 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 ADRA2CP18825 462 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 ATF1P18846 271 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 MYF6P23409 242 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 AZGP1P25311 298 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 BDH1Q02338 343 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 PAX2Q02962 417 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 UBE2V2Q15819 145 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 LYPD2Q6UXB3 125 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 IZUMO2Q6UXV1 221 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 IL17RELQ6ZVW7 336 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 SERPINA12Q8IW75 414 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 RDH10Q8IZV5 341 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 PARP16Q8N5Y8 322 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 BPIFB6Q8NFQ5 453 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 ANGPTL6Q8NI99 470 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 NRG4Q8WWG1 115 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 GGHQ92820 318 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 ADAT3Q96EY9 351 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 CEP19Q96LK0 163 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 ZCCHC4Q9H5U6 513 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 FKBP14Q9NWM8 211 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 BLOC1S6Q9UL45 172 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 TPRKBQ9Y3C4 175 aa11.96□□□□□ -0.49
CCDC88C-207ENST00000554051 IGHV3OR15-7A0A075B7D8 119 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 TRAPPC2LH3BP13 241 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 SLC1A7O00341 560 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 DVL1O14640 695 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 MAGEB3O15480 346 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 SULT1B1O43704 296 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 RHBDL1O75783 438 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 KNG1P01042 644 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 FSHBP01225 129 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 EPHA1P21709 976 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 CAV3P56539 151 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 WNT4P56705 351 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 BPIFB3P59826 476 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 PAX8Q06710 450 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 YIF1BQ5BJH7 314 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 ACP7Q6ZNF0 438 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF788Q6ZQV5 615 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 MKXQ8IYA7 352 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 ZNF561Q8N587 486 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 ST8SIA4Q92187 359 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 UPRTQ96BW1 309 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 FGGYQ96C11 551 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 SDSLQ96GA7 329 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 JMJD8Q96S16 334 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 MND1Q9BWT6 205 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 WDR13Q9H1Z4 485 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 Q9H521 79 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 HES4Q9HCC6 221 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 MMP26Q9NRE1 261 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 CKLFQ9UBR5 152 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 PCDHGB5Q9Y5G0 923 aa11.95□□□□□ -0.5
CCDC88C-207ENST00000554051 TRBV23-1A0A0A0MS06 115 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 OGG1O15527 345 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 TCF21O43680 179 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 XPNPEP2O43895 674 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 CD1AP06126 327 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 FPR2P25090 351 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 VHLP40337 213 aa11.94□□□□□ -0.5
CCDC88C-207ENST00000554051 MTCP1P56278 107 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms