RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RHEBQ15382 184 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 TOR2AQ5JU69 321 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 FAM122BQ7Z309 247 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 ADPRHL1Q8NDY3 354 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 SARAFQ96BY9 339 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 HDHD3Q9BSH5 251 aaPredicted RBP13.22□□□□□ -0.29
CUX1-214ENST00000550008 ARRDC1Q8N5I2 433 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 OR13C8Q8NGS7 320 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 APOBEC3DQ96AK3 386 aaPredicted RBP13.22□□□□□ -0.29
CUX1-214ENST00000550008 SPSB1Q96BD6 273 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 SCMH1Q96GD3 660 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 NPAS1Q99742 590 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 SLC17A5Q9NRA2 495 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 TP53TG5Q9Y2B4 290 aa13.22□□□□□ -0.29
CUX1-214ENST00000550008 IGKV1D-43A0A0B4J1Z2 117 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 TRAV39A0A0B4J263 110 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 A0A1W2PPC1 479 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 KRBOX1C9JBD0 128 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 TXNDC12O95881 172 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 FUT3P21217 361 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 CD80P33681 288 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 CNTNAP3Q9BZ76 1288 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 DIDO1Q9BTC0 2240 aaKnown RBP13.21□□□□□ -0.29
CUX1-214ENST00000550008 C1orf196B1AJZ1 125 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 SSSCA1O60232 199 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 IL2RAP01589 272 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 RRASP10301 218 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 TNFSF4P23510 183 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 RPL12P30050 165 aaKnown RBP13.21□□□□□ -0.29
CUX1-214ENST00000550008 ZXDAP98168 799 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 ZNF573Q86YE8 665 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 RFESDQ8TAC1 157 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 OIT3Q8WWZ8 545 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 MARC2Q969Z3 335 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 BIN3Q9NQY0 253 aa13.21□□□□□ -0.29
CUX1-214ENST00000550008 LOC101059948A0A1B0GTJ6 334 aa13.21□□□□□ -0.3
CUX1-214ENST00000550008 KCNAB3O43448 404 aa13.21□□□□□ -0.3
CUX1-214ENST00000550008 IFNA4P05014 189 aa13.21□□□□□ -0.3
CUX1-214ENST00000550008 LIMK1P53667 647 aa13.21□□□□□ -0.3
CUX1-214ENST00000550008 SOX8P57073 446 aa13.21□□□□□ -0.3
CUX1-214ENST00000550008 RSPO3Q9BXY4 272 aaPredicted RBP13.21□□□□□ -0.3
CUX1-214ENST00000550008 GHRLQ9UBU3 117 aa13.21□□□□□ -0.3
CUX1-214ENST00000550008 TXNL1O43396 289 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 GPR137BO60478 399 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 RAG2P55895 527 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 MLF1P58340 268 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 PRDX4Q13162 271 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 DCAF10Q5QP82 559 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 LYPD8Q6UX82 237 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 CLEC9AQ6UXN8 241 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 OR8U1Q8NH10 309 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 KCNK17Q96T54 332 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 WDR13Q9H1Z4 485 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 INTS1Q8N201 2190 aaKnown RBP13.2□□□□□ -0.3
CUX1-214ENST00000550008 M0R1B8 84 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 GSTZ1O43708 216 aaPredicted RBP13.2□□□□□ -0.3
CUX1-214ENST00000550008 CST7O76096 145 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 TBPP20226 339 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 HLXQ14774 488 aaPredicted RBP13.2□□□□□ -0.3
CUX1-214ENST00000550008 C11orf87Q6NUJ2 197 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 SEZ6L2Q6UXD5 910 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 BAP18Q8IXM2 172 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 SUMF2Q8NBJ7 301 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 C9orf170A2RU37 121 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 GEMIN2O14893 280 aaKnown RBP13.2□□□□□ -0.3
CUX1-214ENST00000550008 CNR1P21554 472 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 RPS16P62249 146 aaKnown RBP13.2□□□□□ -0.3
CUX1-214ENST00000550008 ATP1A1-AS1Q5TC04 95 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 C19orf48Q6RUI8 117 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 TCTEX1D2Q8WW35 142 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 RGP1Q92546 391 aaPredicted RBP13.2□□□□□ -0.3
CUX1-214ENST00000550008 ZNF75AQ96N20 296 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 WDR54Q9H977 334 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 SPACA1Q9HBV2 294 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 MPDZO75970 2070 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 IGKV3D-11A0A0A0MRZ8 115 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 ATG12O94817 140 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 IGLV3-19P01714 112 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 IGHV3-13P01766 116 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 IGHV3-7P01780 117 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 PTGER4P35408 488 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 CATR1Q13166 79 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 H3F3CQ6NXT2 135 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 SVBPQ8N300 66 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 C2orf50Q96LR7 162 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 FBXO7Q9Y3I1 522 aa13.2□□□□□ -0.3
CUX1-214ENST00000550008 HPP00738 406 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 SULT1A3P0DMM9 295 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 SULT1A4P0DMN0 295 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 IAPPP10997 89 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 CBR1P16152 277 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 S100A12P80511 92 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 PMP22Q01453 160 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 SSBP1Q04837 148 aaKnown RBP13.19□□□□□ -0.3
CUX1-214ENST00000550008 RAB32Q13637 225 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 LGALSLQ3ZCW2 172 aaPredicted RBP13.19□□□□□ -0.3
CUX1-214ENST00000550008 TMEM182Q6ZP80 229 aaPredicted RBP13.19□□□□□ -0.3
CUX1-214ENST00000550008 H1FXQ92522 213 aaKnown RBP13.19□□□□□ -0.3
CUX1-214ENST00000550008 MYO7BQ6PIF6 2116 aa13.19□□□□□ -0.3
CUX1-214ENST00000550008 ABCA4P78363 2273 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms