RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 IQCF1Q8N6M8 205 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 KLHDC1Q8N7A1 406 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 FAM81AQ8TBF8 368 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 GIPC3Q8TF64 312 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 C17orf50Q8WW18 174 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 AQP3Q92482 292 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 FEVQ99581 238 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 CHID1Q9BWS9 393 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 CDCA4Q9BXL8 241 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 SIGLEC9Q9Y336 463 aa10.45□□□□□ -0.74
PTCH1-218ENST00000548945 COL7A1Q02388 2944 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 VGLL3A8MV65 326 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 CASQ2O14958 399 aaPredicted RBP10.44□□□□□ -0.74
PTCH1-218ENST00000548945 SELENOFO60613 162 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 HMGN1P05114 100 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 ALOX5APP20292 161 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 RPL31P62899 125 aaKnown RBP10.44□□□□□ -0.74
PTCH1-218ENST00000548945 LY6EQ16553 131 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 SMIM21Q3B7S5 101 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 PLBD1Q6P4A8 553 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 ACP7Q6ZNF0 438 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 THAP5Q7Z6K1 395 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 KRT77Q7Z794 578 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 MKXQ8IYA7 352 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 ZNF561Q8N587 486 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 RORBQ92753 470 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 VCX3BQ9H321 246 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 ELL3Q9HB65 397 aaPredicted RBP10.44□□□□□ -0.74
PTCH1-218ENST00000548945 C19orf12Q9NSK7 152 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 FOXJ3Q9UPW0 622 aa10.44□□□□□ -0.74
PTCH1-218ENST00000548945 SLC1A7O00341 560 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 XPNPEP2O43895 674 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 NOS1APO75052 506 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-218ENST00000548945 IGLV3-1P01715 115 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 VHLP40337 213 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 CAPZA1P52907 286 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 LGALS4P56470 323 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 RIPPLY1Q0D2K3 151 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 ATP6AP1Q15904 470 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 CEP78Q5JTW2 689 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 LCN1P1Q5VSP4 162 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 KCTD18Q6PI47 426 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-218ENST00000548945 HAGHLQ6PII5 290 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-218ENST00000548945 Q6ZPA2 131 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 CALHM1Q8IU99 346 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 C11orf42Q8N5U0 333 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 POC1AQ8NBT0 407 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 PIFOQ8TCI5 191 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 YIPF3Q9GZM5 350 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 FAM206AQ9NX38 181 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 USE1Q9NZ43 259 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 LAMP5Q9UJQ1 280 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 KLHDC2Q9Y2U9 406 aa10.43□□□□□ -0.74
PTCH1-218ENST00000548945 TMEM269A0A1B0GVZ9 245 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 FAM90A8PA6NJQ4 464 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 RFPL4AA6NLU0 287 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 RFPL4AL1F8VTS6 287 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 PIN1P1O15428 100 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 CHST1O43916 411 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 ZNF254O75437 659 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 PGA5P0DJD9 388 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 SLC2A5P22732 501 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 ERVFRD-1P60508 538 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 CDK5Q00535 292 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 ROM1Q03395 351 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 EMX1Q04741 257 aaPredicted RBP10.42□□□□□ -0.74
PTCH1-218ENST00000548945 GINS1Q14691 196 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 TMEM200BQ69YZ2 307 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 CPOQ8IVL8 374 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 Q8N2B8 174 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 CD177Q8N6Q3 437 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 OR4S1Q8NGB4 309 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 CENPNQ96H22 339 aaPredicted RBP10.42□□□□□ -0.74
PTCH1-218ENST00000548945 MROQ9BYG7 248 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 DNAJB9Q9UBS3 223 aa10.42□□□□□ -0.74
PTCH1-218ENST00000548945 TENM3Q9P273 2699 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 MEGF11A6BM72 1044 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 J3QT63 122 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 FBXO24O75426 580 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 E2F6O75461 281 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 CST1P01037 141 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 RBP4P02753 201 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 VSIG10L2P0DP72 767 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 OSMP13725 252 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 PEX2P28328 305 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 PRDX2P32119 198 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 FAM189A2Q15884 450 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 ZNF829Q3KNS6 432 aaPredicted RBP10.41□□□□□ -0.74
PTCH1-218ENST00000548945 ZNF684Q5T5D7 378 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 OGFRL1Q5TC84 451 aaPredicted RBP10.41□□□□□ -0.74
PTCH1-218ENST00000548945 PLCXD3Q63HM9 321 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 MOB3CQ70IA8 216 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 AMIGO2Q86SJ2 522 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 ZNF573Q86YE8 665 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 ZNF679Q8IYX0 411 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 C11orf44Q8N8P7 122 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 NRG4Q8WWG1 115 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 ASB17Q8WXJ9 295 aa10.41□□□□□ -0.74
PTCH1-218ENST00000548945 FOXRED1Q96CU9 486 aaPredicted RBP10.41□□□□□ -0.74
PTCH1-218ENST00000548945 TEX12Q9BXU0 123 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms