RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SEC22AQ96IW7 307 aa7.87□□□□□ -1.15
VPS13D-212ENST00000543766 LPAR4Q99677 370 aa7.87□□□□□ -1.15
VPS13D-212ENST00000543766 ACTR3CQ9C0K3 210 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-212ENST00000543766 PIGLQ9Y2B2 252 aa7.87□□□□□ -1.15
VPS13D-212ENST00000543766 CENPVL1A0A0U1RR11 272 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CENPVL3A0A0U1RRI6 287 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MBD3L4A6NDZ8 208 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MBD3L3A6NE82 208 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MBD3L5A6NJ08 208 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 NFATC1O95644 943 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MAS1P04201 325 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 SLC35G6P0C7Q6 338 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 TYRP14679 529 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 SELPP16109 830 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 XCR1P46094 333 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 PRLHRP49683 370 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MTPNP58546 118 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 EIF4EBP2Q13542 120 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 PRRT3Q5FWE3 981 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 WIPI1Q5MNZ9 446 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 TMEM244Q5VVB8 128 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 Q6ZNB5 142 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 Q6ZTK2 550 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 TPRG1Q6ZUI0 275 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 OR2W3Q7Z3T1 314 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MUC20Q8N307 709 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 ZNF615Q8N8J6 731 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CHST4Q8NCG5 386 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 BAHD1Q8TBE0 780 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 SERHLQ9NQF3 203 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MRPL16Q9NX20 251 aaKnown RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CARHSP1Q9Y2V2 147 aaKnown RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 GAGE12HA6NDE8 117 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 SLC38A8A6NNN8 435 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 FOXI3A8MTJ6 420 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 DCTN6O00399 190 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CD74P04233 296 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CTSBP07858 339 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MST1P26927 711 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 TIA1P31483 386 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 SOX3P41225 446 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 ZNF133P52736 654 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 ZNF140P52738 457 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 PRSS12P56730 875 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 DLX2Q07687 328 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 TCEAL5Q5H9L2 206 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 TMEM207Q6UWW9 146 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 OR4D11Q8NGI4 311 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 OR4A4PQ8NGN8 299 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 RAB39BQ96DA2 213 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 FAM46AQ96IP4 442 aaKnown RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 C16orf70Q9BSU1 422 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 IKZF5Q9H5V7 419 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 FOXJ3Q9UPW0 622 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 SCML2Q9UQR0 700 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CHST2Q9Y4C5 530 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 COL4A4P53420 1690 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 NUMA1Q14980 2115 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 A0A1B0GTL3 188 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 WIPF1O43516 503 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MPZL1O95297 269 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MDKP21741 143 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 MPZP25189 248 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 GABRA4P48169 554 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 HTR6P50406 440 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CTBP1Q13363 440 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 PAFAH1B3Q15102 231 aaKnown RBP7.86□□□□□ -1.15
VPS13D-212ENST00000543766 ALKAL1Q6UXT8 129 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 SPNS2Q8IVW8 549 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 LFNGQ8NES3 379 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 UHRF2Q96PU4 802 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 C1QTNF4Q9BXJ3 329 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 POPDC3Q9HBV1 291 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 HEBP1Q9NRV9 189 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 CA10Q9NS85 328 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 A0A0C4DFX4 3053 aa7.86□□□□□ -1.15
VPS13D-212ENST00000543766 TPST2O60704 377 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 FGF9P31371 208 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-212ENST00000543766 GABRA5P31644 462 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 BTCP35070 178 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 ZFP36L1Q07352 338 aaKnown RBP7.85□□□□□ -1.15
VPS13D-212ENST00000543766 NRN1LQ496H8 165 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 LRRC37A5PQ49AS3 106 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 CRB2Q5IJ48 1285 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 TCTEX1D4Q5JR98 221 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 AWAT2Q6E213 333 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 ZBTB45Q96K62 511 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-212ENST00000543766 TXNIPQ9H3M7 391 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 IGSF23A1L1A6 192 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 NKX2-6A6NCS4 301 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 EPCAMP16422 314 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 TACR1P25103 407 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 APOBEC1P41238 236 aaKnown RBP7.85□□□□□ -1.15
VPS13D-212ENST00000543766 KIR3DL1P43629 444 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 FA2HQ7L5A8 372 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 RNF144BQ7Z419 303 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 OR8B12Q8NGG6 310 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 PYURFQ96I23 114 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 WDCPQ9H6R7 721 aa7.85□□□□□ -1.15
VPS13D-212ENST00000543766 PLAGL1Q9UM63 463 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms