RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TXNL4BQ9NX01 149 aaKnown RBP14.41□□□□□ -0.1
LIG1-204ENST00000542460 GSTK1Q9Y2Q3 226 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 RHBDL1O75783 438 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 ZNF93P35789 620 aaPredicted RBP14.41□□□□□ -0.1
LIG1-204ENST00000542460 RBMXP38159 391 aaKnown RBP14.41□□□□□ -0.1
LIG1-204ENST00000542460 GPR6P46095 362 aaPredicted RBP14.41□□□□□ -0.1
LIG1-204ENST00000542460 RPL5P46777 297 aaKnown RBP14.41□□□□□ -0.1
LIG1-204ENST00000542460 HNRNPA0Q13151 305 aaKnown RBP14.41□□□□□ -0.1
LIG1-204ENST00000542460 CRIP3Q6Q6R5 217 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 MKXQ8IYA7 352 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 GCSAMQ8N6F7 178 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 NKAIN3Q8N8D7 197 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 LRRC29Q8WV35 223 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 METTL17Q9H7H0 456 aaPredicted RBP14.41□□□□□ -0.1
LIG1-204ENST00000542460 NPTNQ9Y639 398 aa14.41□□□□□ -0.1
LIG1-204ENST00000542460 TRAV1-2A0A0B4J238 106 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 SYNGR1O43759 233 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 CYB5AP00167 134 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 PLATP00750 562 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 ACAA1P09110 424 aaPredicted RBP14.4□□□□□ -0.1
LIG1-204ENST00000542460 POU3F4P49335 361 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 PDZK1IP1Q13113 114 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 SLC25A26Q70HW3 274 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 RNF144BQ7Z419 303 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 GPR141Q7Z602 305 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 LRRTM1Q86UE6 522 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 RFT1Q96AA3 541 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 FUNDC2Q9BWH2 189 aa14.4□□□□□ -0.1
LIG1-204ENST00000542460 CCDC168Q8NDH2 2452 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 PPIAL4EA0A075B759 164 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 IGHV4-30-2A0A087WSY4 118 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 LOC100506127A0A0U1RQW1 187 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 VWC2LB2RUY7 222 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 SRRM5B3KS81 715 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 PPIAL4DF5H284 164 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 AKR7A2O43488 359 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 AIREO43918 545 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 NOS1APO75052 506 aaPredicted RBP14.39□□□□□ -0.11
LIG1-204ENST00000542460 FSTL3O95633 263 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 PPIAL4FP0DN26 164 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 SLC25A16P16260 332 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 ADRA2CP18825 462 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 MYL9P24844 172 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 JAGN1Q8N5M9 183 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 BOLLQ8N9W6 283 aaKnown RBP14.39□□□□□ -0.11
LIG1-204ENST00000542460 PNLDC1Q8NA58 520 aaKnown RBP14.39□□□□□ -0.11
LIG1-204ENST00000542460 OR5D18Q8NGL1 313 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 OR51F2Q8NH61 342 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 FOXRED1Q96CU9 486 aaPredicted RBP14.39□□□□□ -0.11
LIG1-204ENST00000542460 Q96MF0 132 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 KCTD7Q96MP8 289 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 BPESC1Q9GZL8 116 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 WIPI2Q9Y4P8 454 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 PPIAL4AQ9Y536 164 aa14.39□□□□□ -0.11
LIG1-204ENST00000542460 SPRY1O43609 319 aaPredicted RBP14.38□□□□□ -0.11
LIG1-204ENST00000542460 PGA5P0DJD9 388 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 TMEM225BP0DP42 221 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 NR4A2P43354 598 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 ZP1P60852 638 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 BTG1P62324 171 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 FAM201AQ5SY85 155 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 AVPI1Q5T686 147 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 GLT8D1Q68CQ7 371 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 SAXO1Q8IYX7 474 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 ZSCAN4Q8NAM6 433 aaPredicted RBP14.38□□□□□ -0.11
LIG1-204ENST00000542460 POC1AQ8NBT0 407 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 WFDC11Q8NEX6 87 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 RASL12Q9NYN1 266 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 MTCH1Q9NZJ7 389 aa14.38□□□□□ -0.11
LIG1-204ENST00000542460 PDCD5O14737 125 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 ZNF205O95201 554 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 IGHV2-70P01814 119 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 EGR1P18146 543 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 GLRA1P23415 457 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 PTGFRP43088 359 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 PSMD7P51665 324 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 ZMYND11Q15326 602 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 LRRC28Q86X40 367 aaPredicted RBP14.37□□□□□ -0.11
LIG1-204ENST00000542460 LYPD6Q86Y78 171 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 TNFAIP8L1Q8WVP5 186 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 SLAMF9Q96A28 289 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 CEP19Q96LK0 163 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 NRIP2Q9BQI9 281 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 UQCC2Q9BRT2 126 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 CENPOQ9BU64 300 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 DYSFO75923 2080 aa14.37□□□□□ -0.11
LIG1-204ENST00000542460 ISPDA4D126 451 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 OOEPA6NGQ2 149 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 TRAPPC2LH3BP13 241 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 LGALS8O00214 317 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 ANGPTL7O43827 346 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 CD37P11049 281 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 MUC1P15941 1255 aaPredicted RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 CD80P33681 288 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 MDH2P40926 338 aaKnown RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 OR3A4PP47883 348 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 MTNR1BP49286 362 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 ERVK11-1P61568 191 aa14.36□□□□□ -0.11
LIG1-204ENST00000542460 HOXA4Q00056 320 aaPredicted RBP14.36□□□□□ -0.11
LIG1-204ENST00000542460 TEX36Q5VZQ5 186 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms