RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 C1orf21Q9H246 121 aa11.5□□□□□ -0.57
SNHG1-213ENST00000540725 TVP23BQ9NYZ1 205 aa11.5□□□□□ -0.57
SNHG1-213ENST00000540725 NUFIP1Q9UHK0 495 aaKnown RBP11.5□□□□□ -0.57
SNHG1-213ENST00000540725 ENPP5Q9UJA9 477 aa11.5□□□□□ -0.57
SNHG1-213ENST00000540725 COPS3Q9UNS2 423 aa11.5□□□□□ -0.57
SNHG1-213ENST00000540725 ZNF254O75437 659 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 NRASP01111 189 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 PGA5P0DJD9 388 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 PAX6P26367 422 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 KIR2DS4P43632 304 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 RIDAP52758 137 aaKnown RBP11.49□□□□□ -0.57
SNHG1-213ENST00000540725 RPL31P62899 125 aaKnown RBP11.49□□□□□ -0.57
SNHG1-213ENST00000540725 MFGE8Q08431 387 aaPredicted RBP11.49□□□□□ -0.57
SNHG1-213ENST00000540725 AANATQ16613 207 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 ZNF684Q5T5D7 378 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 CCDC197Q8NCU1 140 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 ASB17Q8WXJ9 295 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 PPP1R14AQ96A00 147 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 HEXA-AS1Q9H8Q6 139 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 IKZF2Q9UKS7 526 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 TMEM14AQ9Y6G1 99 aa11.49□□□□□ -0.57
SNHG1-213ENST00000540725 A0A1W2PPH5 198 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 J3QT63 122 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 SLC1A7O00341 560 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 SYNGR1O43759 233 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 DHRS3O75911 302 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 TTRP02766 147 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 PRDX2P32119 198 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 HAAOP46952 286 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 CEBPDP49716 269 aaPredicted RBP11.48□□□□□ -0.57
SNHG1-213ENST00000540725 C11orf88Q6PI97 169 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 CRIP3Q6Q6R5 217 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 ZNF561Q8N587 486 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 CNN2Q99439 309 aaKnown RBP11.48□□□□□ -0.57
SNHG1-213ENST00000540725 RANBP3Q9H6Z4 567 aaPredicted RBP11.48□□□□□ -0.57
SNHG1-213ENST00000540725 RAB18Q9NP72 206 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 DNAJB9Q9UBS3 223 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 GTF2A1LQ9UNN4 478 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 FOXJ3Q9UPW0 622 aa11.48□□□□□ -0.57
SNHG1-213ENST00000540725 NOS1APO75052 506 aaPredicted RBP11.47□□□□□ -0.57
SNHG1-213ENST00000540725 FKBP6O75344 327 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 NXPH2O95156 264 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 FAM107AO95990 144 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 CCL3L1P16619 93 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 COX7A1P24310 79 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 BMXP51813 675 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 CRISP1P54107 249 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 CLVS2Q5SYC1 327 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 TMEM200BQ69YZ2 307 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 HIST2H2BDQ6DRA6 164 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 SPATA24Q86W54 205 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 ZNF573Q86YE8 665 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 C11orf42Q8N5U0 333 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 KLHDC1Q8N7A1 406 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 C11orf44Q8N8P7 122 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 OR4M1Q8NGD0 313 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 OR2T27Q8NH04 317 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 OR2T6Q8NHC8 308 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 DNAJC9Q8WXX5 260 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 PAPOLBQ9NRJ5 636 aaKnown RBP11.47□□□□□ -0.57
SNHG1-213ENST00000540725 GPR173Q9NS66 373 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 USE1Q9NZ43 259 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 POLDIP2Q9Y2S7 368 aa11.47□□□□□ -0.57
SNHG1-213ENST00000540725 hCG_1809904A0A1W2PP81 198 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 A0A1W2PPE2 198 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 A0A1W2PR64 198 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 A0A1W2PRV1 198 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 PQLC2LA1A4F0 135 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 LOC110117498-PIK3R3F6TDL0 507 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 SRSF10O75494 262 aaKnown RBP11.46□□□□□ -0.57
SNHG1-213ENST00000540725 LGALS4P56470 323 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 ERVFRD-1P60508 538 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 ESRRGP62508 458 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 FLOT2Q14254 428 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 ZNF273Q14593 569 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 KIAA2026Q5HYC2 2103 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 BCL2L15Q5TBC7 163 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 TMEM42Q69YG0 159 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 ZNF322Q6U7Q0 402 aaPredicted RBP11.46□□□□□ -0.57
SNHG1-213ENST00000540725 ZNF782Q6ZMW2 699 aaPredicted RBP11.46□□□□□ -0.57
SNHG1-213ENST00000540725 BATF2Q8N1L9 274 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 CFHR4Q92496 578 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 APOL4Q9BPW4 351 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 NRIP2Q9BQI9 281 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 NPFFR1Q9GZQ6 430 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 MOB1AQ9H8S9 216 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 OR14J1Q9UGF5 321 aa11.46□□□□□ -0.57
SNHG1-213ENST00000540725 TCRBV3S1A0A5B6 114 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 MEGF11A6BM72 1044 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 G3V4G9 280 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 DLGAP1O14490 977 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 MAGEB4O15481 346 aaPredicted RBP11.45□□□□□ -0.58
SNHG1-213ENST00000540725 CHST1O43916 411 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 PRKYO43930 277 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 OPN1MWP04001 364 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 OPN1MW2P0DN77 364 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 OPN1MW3P0DN78 364 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 MPZP25189 248 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 CXCR4P61073 352 aa11.45□□□□□ -0.58
SNHG1-213ENST00000540725 PTGES3Q15185 160 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms