RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C11orf42Q8N5U0 333 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 CD177Q8N6Q3 437 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 POC1AQ8NBT0 407 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 OR4C13Q8NGP0 309 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 OR51E1Q8TCB6 317 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 CFHR4Q92496 578 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 RORBQ92753 470 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 MROQ9BYG7 248 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 PBOV1Q9GZY1 135 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 SLC25A19Q9HC21 320 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 RAB18Q9NP72 206 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 KRT84Q9NSB2 600 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 ENOPH1Q9UHY7 261 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 SIGLEC9Q9Y336 463 aa9.23□□□□□ -0.93
VPS28-214ENST00000531032 MEGF11A6BM72 1044 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 CCDC182A6NF36 153 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 RFPL4AA6NLU0 287 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 RFPL4AL1F8VTS6 287 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 PSMD9O00233 223 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 ZNF254O75437 659 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 DHRS3O75911 302 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 OPN1MWP04001 364 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 OPN1MW2P0DN77 364 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 OPN1MW3P0DN78 364 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 FAHP16930 419 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 CAPZA1P52907 286 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 CRISP1P54107 249 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 RPL31P62899 125 aaKnown RBP9.22□□□□□ -0.93
VPS28-214ENST00000531032 APOFQ13790 326 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 ATP6AP1Q15904 470 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 LY6EQ16553 131 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 ZNF829Q3KNS6 432 aaPredicted RBP9.22□□□□□ -0.93
VPS28-214ENST00000531032 KPRPQ5T749 579 aaPredicted RBP9.22□□□□□ -0.93
VPS28-214ENST00000531032 PLCXD3Q63HM9 321 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 TMEM200BQ69YZ2 307 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 LIAT1Q6ZQX7 453 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 MOB3CQ70IA8 216 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 COMMD2Q86X83 199 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 ZDHHC13Q8IUH4 622 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 ZNF679Q8IYX0 411 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 OR8B4Q96RC9 309 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 TEAD3Q99594 435 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 HEXA-AS1Q9H8Q6 139 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 GPR84Q9NQS5 396 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 NUFIP1Q9UHK0 495 aaKnown RBP9.22□□□□□ -0.93
VPS28-214ENST00000531032 ENPP5Q9UJA9 477 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 COPS3Q9UNS2 423 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 PIGLQ9Y2B2 252 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 AP4S1Q9Y587 144 aa9.22□□□□□ -0.93
VPS28-214ENST00000531032 A0A1W2PPH5 198 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 G3V2T6 193 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 G3V4G9 280 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 J3QT63 122 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 SLC1A7O00341 560 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 SYNGR1O43759 233 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 CHST1O43916 411 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 NOS1APO75052 506 aaPredicted RBP9.21□□□□□ -0.94
VPS28-214ENST00000531032 SRSF10O75494 262 aaKnown RBP9.21□□□□□ -0.94
VPS28-214ENST00000531032 NRASP01111 189 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 TTRP02766 147 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 MRPL3P09001 348 aaKnown RBP9.21□□□□□ -0.94
VPS28-214ENST00000531032 PGA5P0DJD9 388 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 PRDX2P32119 198 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 HAAOP46952 286 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 DAPP51397 102 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 ESRRGP62508 458 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 MFGE8Q08431 387 aaPredicted RBP9.21□□□□□ -0.94
VPS28-214ENST00000531032 BEAN1Q3B7T3 259 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 ZNF684Q5T5D7 378 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 TMEM42Q69YG0 159 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 FAHD1Q6P587 224 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 ZNF573Q86YE8 665 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 KLHDC1Q8N7A1 406 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 OR2T6Q8NHC8 308 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 PIFOQ8TCI5 191 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 ASB17Q8WXJ9 295 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 ZNF488Q96MN9 340 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 NRIP2Q9BQI9 281 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 NPFFR1Q9GZQ6 430 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 USE1Q9NZ43 259 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 H2AFY2Q9P0M6 372 aaPredicted RBP9.21□□□□□ -0.94
VPS28-214ENST00000531032 FOXJ3Q9UPW0 622 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 POLDIP2Q9Y2S7 368 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 TMEM14AQ9Y6G1 99 aa9.21□□□□□ -0.94
VPS28-214ENST00000531032 PLXNB1O43157 2135 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 hCG_1809904A0A1W2PP81 198 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 A0A1W2PPE2 198 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 A0A1W2PR64 198 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 A0A1W2PRV1 198 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 PQLC2LA1A4F0 135 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 FAM90A8PA6NJQ4 464 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 VGLL3A8MV65 326 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 DLGAP1O14490 977 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 PAX6P26367 422 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 CEBPDP49716 269 aaPredicted RBP9.2□□□□□ -0.94
VPS28-214ENST00000531032 BMXP51813 675 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 RIDAP52758 137 aaKnown RBP9.2□□□□□ -0.94
VPS28-214ENST00000531032 ZNF273Q14593 569 aa9.2□□□□□ -0.94
VPS28-214ENST00000531032 PTGES3Q15185 160 aaKnown RBP9.2□□□□□ -0.94
VPS28-214ENST00000531032 CLVS2Q5SYC1 327 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms