RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 GDF9O60383 454 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 LRP3O75074 770 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 HEXAP06865 529 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 ARL6IP1Q15041 203 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 SNAI3Q3KNW1 292 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 OR2A2Q6IF42 318 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 NANPQ8TBE9 248 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 GNRHR2Q96P88 292 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 RHOFQ9HBH0 211 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 TAF9BQ9HBM6 251 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 C1orf123Q9NWV4 160 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 OCIAD1Q9NX40 245 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 A0A087WZY1 265 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 DHHO43323 396 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 MUC1P15941 1255 aaPredicted RBP16.82■□□□□ 0.28
VPS28-213ENST00000530983 EPHA8P29322 1005 aaPredicted RBP16.82■□□□□ 0.28
VPS28-213ENST00000530983 RBMXP38159 391 aaKnown RBP16.82■□□□□ 0.28
VPS28-213ENST00000530983 LPAR6P43657 344 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 POLR2GP62487 172 aaKnown RBP eCLIP16.82■□□□□ 0.28
VPS28-213ENST00000530983 PPA1Q15181 289 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 IAH1Q2TAA2 248 aaPredicted RBP16.82■□□□□ 0.28
VPS28-213ENST00000530983 Q96M66 194 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 NRIP2Q9BQI9 281 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 CNTNAP3Q9BZ76 1288 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 PLEKHJ1Q9NW61 149 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 WNT16Q9UBV4 365 aa16.82■□□□□ 0.28
VPS28-213ENST00000530983 NPIPA2E9PIF3 369 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 NPIPA3F8WFD2 350 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 TAAR5O14804 337 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 RRP8O43159 456 aaKnown RBP16.81■□□□□ 0.28
VPS28-213ENST00000530983 SERPINA5P05154 406 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 CAV2P51636 162 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 IGSF11Q5DX21 431 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 RTL6Q6ICC9 239 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 RPUSD3Q6P087 351 aaKnown RBP16.81■□□□□ 0.28
VPS28-213ENST00000530983 OR9K2Q8NGE7 335 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 FBXO17Q96EF6 278 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 ZNF837Q96EG3 531 aaPredicted RBP16.81■□□□□ 0.28
VPS28-213ENST00000530983 PLEK2Q9NYT0 353 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 CCL3P10147 92 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 SULF2Q8IWU5 870 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 C10orf35Q96D05 121 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 DUSP23Q9BVJ7 150 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 PROK2Q9HC23 129 aa16.81■□□□□ 0.28
VPS28-213ENST00000530983 RCC2Q9P258 522 aaKnown RBP16.81■□□□□ 0.28
VPS28-213ENST00000530983 FOXD3Q9UJU5 478 aaPredicted RBP16.81■□□□□ 0.28
VPS28-213ENST00000530983 CNTRLQ7Z7A1 2325 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 ACKR3P25106 362 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 ECI1P42126 302 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 RAET1LQ5VY80 246 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 SGK3Q96BR1 496 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 LIME1Q9H400 295 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 GPR173Q9NS66 373 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 DECR2Q9NUI1 292 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 CRYM-AS1A6NIL9 109 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 K7ESF4 209 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 ZIC3O60481 467 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 EIF1BO60739 113 aaKnown RBP16.8■□□□□ 0.28
VPS28-213ENST00000530983 MED6O75586 246 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 VAMP5O95183 116 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 CTSDP07339 412 aaPredicted RBP16.8■□□□□ 0.28
VPS28-213ENST00000530983 LIFP15018 202 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 SNRPEP62304 92 aaKnown RBP16.8■□□□□ 0.28
VPS28-213ENST00000530983 EIF5AP63241 154 aaKnown RBP16.8■□□□□ 0.28
VPS28-213ENST00000530983 TMEM268Q5VZI3 342 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 ZIC4Q8N9L1 334 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 CPNE2Q96FN4 548 aaPredicted RBP16.8■□□□□ 0.28
VPS28-213ENST00000530983 PLA2G2EQ9NZK7 142 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 ZNF581Q9P0T4 197 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 ANXA10Q9UJ72 324 aa16.8■□□□□ 0.28
VPS28-213ENST00000530983 LOC102723996A0A087X1L8 192 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 TMEM225BP0DP42 221 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 NME2P22392 152 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 RPL12P30050 165 aaKnown RBP16.79■□□□□ 0.28
VPS28-213ENST00000530983 HABP2Q14520 560 aaPredicted RBP16.79■□□□□ 0.28
VPS28-213ENST00000530983 FAM209BQ5JX69 171 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 EIF5AL1Q6IS14 154 aaKnown RBP16.79■□□□□ 0.28
VPS28-213ENST00000530983 SLC16A13Q7RTY0 426 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 SGPP2Q8IWX5 399 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 SKA3Q8IX90 412 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 OR2AE1Q8NHA4 323 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 FNDC9Q8TBE3 224 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 ANGPTL4Q9BY76 406 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 TUBD1Q9UJT1 453 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 SDK2Q58EX2 2172 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 COLCA2A8K830 154 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 G3V3Y1 287 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 ANGPTL7O43827 346 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 DEDDO75618 318 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 FARS2O95363 451 aaKnown RBP16.79■□□□□ 0.28
VPS28-213ENST00000530983 CST4P01036 141 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 SULT1A2P50226 295 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 MTCP1P56278 107 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 RBMS3Q6XE24 437 aaKnown RBP16.79■□□□□ 0.28
VPS28-213ENST00000530983 SPTSSAQ969W0 71 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 MRPL24Q96A35 216 aaKnown RBP16.79■□□□□ 0.28
VPS28-213ENST00000530983 ULBP2Q9BZM5 246 aa16.79■□□□□ 0.28
VPS28-213ENST00000530983 IGHV1-45A0A0A0MS14 117 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 K7EPK0 472 aa16.78■□□□□ 0.28
VPS28-213ENST00000530983 SGCEO43556 437 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms