RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TUBAL3A6NHL2 446 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 RAB27BO00194 218 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 ECDO95905 644 aaPredicted RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 CSTBP04080 98 aaKnown RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 PTAFRP25105 342 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 ERVS71-1P61550 626 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 RPS27AP62979 156 aaKnown RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 GNG3P63215 75 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 DGCR2P98153 550 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 SSBP1Q04837 148 aaKnown RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 ZNF57Q68EA5 555 aaPredicted RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 MZT2BQ6NZ67 158 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 C1QL2Q7Z5L3 287 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 COX4I2Q96KJ9 171 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 MICU1Q9BPX6 476 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 TM2D1Q9BX74 207 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 LPAR5Q9H1C0 372 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 SCPEP1Q9HB40 452 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 ELL3Q9HB65 397 aaPredicted RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 HCFC1P51610 2035 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 CYB5AP00167 134 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 GSTT2BP0CG30 244 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 GTF2F2P13984 249 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 MGMTP16455 207 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 PRSS3P35030 304 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 GLRXP35754 106 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 KIR2DL3P43628 341 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 ARL6IP1Q15041 203 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 RGS7BPQ6MZT1 257 aaPredicted RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 TMEM200AQ86VY9 491 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 ZNF573Q86YE8 665 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 TOMM5Q8N4H5 51 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 TMEM104Q8NE00 496 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 OR8G5Q8NG78 346 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 OR10R2Q8NGX6 335 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 LINC01560Q8TB33 94 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 DEDD2Q8WXF8 326 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 RNF170Q96K19 258 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 C7orf50Q9BRJ6 194 aaKnown RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 RTL8AQ9BWD3 113 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 OCEL1Q9H607 264 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 AUNIPQ9H7T9 357 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 NDRG3Q9UGV2 375 aa18.12■□□□□ 0.49
VPS28-212ENST00000530836 PURGQ9UJV8 347 aaKnown RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 RBMX2Q9Y388 322 aaKnown RBP18.12■□□□□ 0.49
VPS28-212ENST00000530836 ZNF732B4DXR9 585 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 COX6B1P14854 86 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 SERPINA2P20848 420 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 CA6P23280 308 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 CPT2P23786 658 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 CD40P25942 277 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 GPM6AP51674 278 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 ALKBH2Q6NS38 261 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 FAM89BQ8N5H3 189 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 OR8S1Q8NH09 359 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 WFIKKN1Q96NZ8 548 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 TAS2R8Q9NYW2 309 aa18.11■□□□□ 0.49
VPS28-212ENST00000530836 CENPXA8MT69 81 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 PLA2G10O15496 165 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 CD3GP09693 182 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 SNTB2Q13425 540 aaKnown RBP18.1■□□□□ 0.49
VPS28-212ENST00000530836 MKXQ8IYA7 352 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 ZNF611Q8N823 705 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 SPERTQ8NA61 448 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 OR51F2Q8NH61 342 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 OR52I2Q8NH67 350 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 BANF2Q9H503 90 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 TMEM100Q9NV29 134 aa18.1■□□□□ 0.49
VPS28-212ENST00000530836 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 LANCL1O43813 399 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 ORC5O43913 435 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 RBBP9O75884 186 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 MPV17P39210 176 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 GDNFP39905 211 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 HAAOP46952 286 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 VEGFCP49767 419 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 NKX6-1P78426 367 aaPredicted RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 DYRK1AQ13627 763 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 HIST2H2BCQ6DN03 193 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 C22orf34Q6ZV56 151 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 OR51T1Q8NGJ9 327 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 FAM222BQ8WU58 562 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 GAL3ST1Q99999 423 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 NKIRAS2Q9NYR9 191 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 CRIM1Q9NZV1 1036 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 ANKHD1Q8IWZ3 2542 aaKnown RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 LYRM1O43325 122 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 AKR7A2O43488 359 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 SPRY1O43609 319 aaPredicted RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 TIMM8AO60220 97 aaPredicted RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 LILRA1O75019 489 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 LPLP06858 475 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 MELTFP08582 738 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 GSTP1P09211 210 aaKnown RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 ZNF250P15622 560 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 MZT1Q08AG7 82 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 ZNF260Q3ZCT1 412 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 GDPD3Q7L5L3 318 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 CHST4Q8NCG5 386 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 Q8NFD4 153 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms