RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 CHST11Q9NPF2 352 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 URB1O60287 2271 aaKnown RBP12.48□□□□□ -0.41
USP48-213ENST00000529637 PET100P0DJ07 73 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 GLB1P16278 677 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 HIST1H1BP16401 226 aaKnown RBP12.48□□□□□ -0.41
USP48-213ENST00000529637 FPR2P25090 351 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 HSD11B1P28845 292 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 CAMLGP49069 296 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 ASCL1P50553 236 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 CEBPGP53567 150 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 FAM3AP98173 230 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 RHEBQ15382 184 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 RPUSD3Q6P087 351 aaKnown RBP12.48□□□□□ -0.41
USP48-213ENST00000529637 SLC25A45Q8N413 288 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 UBAC2Q8NBM4 344 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 ZNF501Q96CX3 271 aaPredicted RBP12.48□□□□□ -0.41
USP48-213ENST00000529637 OR6C1Q96RD1 312 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 PARPBPQ9NWS1 579 aa12.48□□□□□ -0.41
USP48-213ENST00000529637 A0A1W2PNR3 127 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 TMEM14DPA8MWL7 114 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 ISG15P05161 165 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 DANCRP0C864 163 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 CDAP32320 146 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 CLRN1P58418 232 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 NKAIN1Q4KMZ8 207 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 ZNF529Q6P280 563 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 GLIPR1L1Q6UWM5 242 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST2H3AQ71DI3 136 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 SLC22A24Q8N4F4 322 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 PRRX2Q99811 253 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 FAM212BQ9NTI7 297 aaPredicted RBP12.47□□□□□ -0.41
USP48-213ENST00000529637 CEACAM18A8MTB9 384 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 FTCDNL1E5RQL4 147 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 BCAT2O15382 392 aaPredicted RBP12.47□□□□□ -0.41
USP48-213ENST00000529637 BPNT1O95861 308 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 TTRP02766 147 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 PRH1P02810 166 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 ZNF20P17024 532 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 TBPP20226 339 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 OR3A4PP47883 348 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 RBP2P50120 134 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 LSM6P62312 80 aaKnown RBP12.47□□□□□ -0.41
USP48-213ENST00000529637 CCL20P78556 96 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 ZNF674Q2M3X9 581 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 VAX1Q5SQQ9 334 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 SLC38A9Q8NBW4 561 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 OR5H2Q8NGV7 314 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 MUCL1Q96DR8 90 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 SLC35B3Q9H1N7 401 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 GFOD1Q9NXC2 390 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HS3ST3B1Q9Y662 390 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BKO60814 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 DEDDO75618 318 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BJP06899 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BOP23527 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BBP33778 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 ZNF93P35789 620 aaPredicted RBP12.47□□□□□ -0.41
USP48-213ENST00000529637 UCP2P55851 309 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BDP58876 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BCP62807 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST2H2BEQ16778 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.47□□□□□ -0.41
USP48-213ENST00000529637 LHFPL1Q86WI0 220 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HSD17B11Q8NBQ5 300 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 OR2AJ1Q8NGZ0 328 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 OR51E1Q8TCB6 317 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 Q8WTZ3 238 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BHQ93079 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 MRPL24Q96A35 216 aaKnown RBP12.47□□□□□ -0.41
USP48-213ENST00000529637 FAM71F1Q96KD3 344 aaPredicted RBP12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BNQ99877 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 HIST1H2BMQ99879 126 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 CHRNA10Q9GZZ6 450 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 SDHAF3Q9NRP4 125 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 C19orf12Q9NSK7 152 aa12.47□□□□□ -0.41
USP48-213ENST00000529637 ANKUB1A6NFN9 424 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 XRCC2O43543 280 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 GAPDHP04406 335 aaKnown RBP12.46□□□□□ -0.41
USP48-213ENST00000529637 HIST1H1DP16402 221 aaKnown RBP12.46□□□□□ -0.41
USP48-213ENST00000529637 AMY2BP19961 511 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 KLK2P20151 261 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 SERPINA2P20848 420 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 DHPSP49366 369 aaPredicted RBP12.46□□□□□ -0.41
USP48-213ENST00000529637 FOXK1P85037 733 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 RSU1Q15404 277 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 Q7L0L9 218 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 ZNF441Q8N8Z8 693 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 MFSD8Q8NHS3 518 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 ST8SIA1Q92185 356 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 EHFQ9NZC4 300 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 OSGIN2Q9Y236 505 aa12.46□□□□□ -0.41
USP48-213ENST00000529637 TGIF2-C20orf24A0A0A6YYL0 155 aa12.46□□□□□ -0.42
USP48-213ENST00000529637 ZNF205O95201 554 aa12.46□□□□□ -0.42
USP48-213ENST00000529637 APOBEC1P41238 236 aaKnown RBP12.46□□□□□ -0.42
USP48-213ENST00000529637 ERVFRD-1P60508 538 aa12.46□□□□□ -0.42
USP48-213ENST00000529637 HAGHQ16775 308 aa12.46□□□□□ -0.42
USP48-213ENST00000529637 KHDC3LQ587J8 217 aa12.46□□□□□ -0.42
USP48-213ENST00000529637 ABHD12BQ7Z5M8 362 aaPredicted RBP12.46□□□□□ -0.42
USP48-213ENST00000529637 C1orf147Q96MC9 270 aaPredicted RBP12.46□□□□□ -0.42
USP48-213ENST00000529637 GPER1Q99527 375 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms