RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RIN1Q13671 783 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ALKBH6Q3KRA9 238 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 FAM27D1Q5T7N8 215 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 GLT8D1Q68CQ7 371 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ASPHD2Q6ICH7 369 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 LRRTM1Q86UE6 522 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 LRP11Q86VZ4 500 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 LYPD6Q86Y78 171 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 FBXL14Q8N1E6 418 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ZNF611Q8N823 705 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 KBTBD8Q8NFY9 601 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 OR56B2PQ8NGI1 322 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 OR5P3Q8WZ94 311 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 CPNE2Q96FN4 548 aaPredicted RBP6.29□□□□□ -1.4
CD44-228ENST00000528455 UQCC2Q9BRT2 126 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 MRI1Q9BV20 369 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 MRPL37Q9BZE1 423 aaKnown RBP6.29□□□□□ -1.4
CD44-228ENST00000528455 DCSTAMPQ9H295 470 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 PLK3Q9H4B4 646 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 FAIMQ9NVQ4 179 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 NKIRAS2Q9NYR9 191 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 TAAR3PQ9P1P4 343 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 EDARQ9UNE0 448 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 V9GY05 133 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ANKHD1Q8IWZ3 2542 aaKnown RBP6.29□□□□□ -1.4
CD44-228ENST00000528455 IGKV1-9A0A0C4DH69 117 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 OR5B21A6NL26 309 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 NPIPB6E9PJ23 425 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 HS3ST1O14792 307 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 PTBP3O95758 552 aaKnown RBP6.28□□□□□ -1.4
CD44-228ENST00000528455 MAS1P04201 325 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 DANCRP0C864 163 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ZNF182P17025 639 aaPredicted RBP6.28□□□□□ -1.4
CD44-228ENST00000528455 CFPP27918 469 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 SOX6P35712 828 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ALDH3B1P43353 468 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ZNF81P51508 661 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 CAPZA1P52907 286 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 MTCP1P56278 107 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 LINC00310P59036 64 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 GNG3P63215 75 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 DYNC1I2Q13409 638 aaKnown RBP6.28□□□□□ -1.4
CD44-228ENST00000528455 KISS1Q15726 138 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 C1orf100Q5SVJ3 147 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 AGAP6Q5VW22 663 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 FAM166AQ6J272 317 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ASCL4Q6XD76 172 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 LHFPL2Q6ZUX7 228 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ZNF573Q86YE8 665 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 THNSL2Q86YJ6 484 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ZDHHC23Q8IYP9 409 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 OR5AS1Q8N127 324 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 MUC15Q8N387 334 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 NKAIN3Q8N8D7 197 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 DYNC2LI1Q8TCX1 351 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ERGIC1Q969X5 290 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 SLC25A46Q96AG3 418 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 ORAI1Q96D31 301 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 RNF170Q96K19 258 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 SORCS2Q96PQ0 1159 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 MICU1Q9BPX6 476 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 PAPOLGQ9BWT3 736 aaKnown RBP6.28□□□□□ -1.4
CD44-228ENST00000528455 KRTAP4-8Q9BYQ9 185 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 CXXC4Q9H2H0 198 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 TPK1Q9H3S4 243 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 RNF167Q9H6Y7 350 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 PCDHB16Q9NRJ7 776 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 CBLN4Q9NTU7 201 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 C14orf119Q9NWQ9 140 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 TAS2R4Q9NYW5 299 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 GHRLQ9UBU3 117 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 IL19Q9UHD0 177 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 FZR1Q9UM11 496 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 AK6Q9Y3D8 172 aaKnown RBP6.28□□□□□ -1.4
CD44-228ENST00000528455 PMF1-BGLAPU3KQ54 211 aa6.28□□□□□ -1.4
CD44-228ENST00000528455 PLCE1Q9P212 2302 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ABCA4P78363 2273 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 TEP1Q99973 2627 aaKnown RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 PQLC2LA1A4F0 135 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 TMEM210A6NLX4 147 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 IFITM5A6NNB3 132 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 C17orf100A8MU93 164 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 ZNF732B4DXR9 585 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 PLA2G1BP04054 148 aaKnown RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 CD55P08174 381 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 OCMP0CE72 109 aaPredicted RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 ADRA2CP18825 462 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 TNFSF4P23510 183 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 AZGP1P25311 298 aaKnown RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 ZNF93P35789 620 aaPredicted RBP6.27□□□□□ -1.41
CD44-228ENST00000528455 CFHR2P36980 270 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 PTGFRP43088 359 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 SERPINB10P48595 397 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 SCAND1P57086 179 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 GPR176Q14439 515 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 SPCS2Q15005 226 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 OR8G1Q15617 311 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 DGUOKQ16854 277 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 PCGF3Q3KNV8 242 aa6.27□□□□□ -1.41
CD44-228ENST00000528455 TMEM255AQ5JRV8 349 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms